View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_93 (Length: 235)
Name: NF1854_high_93
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_93 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4170742 - 4170521
Alignment:
| Q |
1 |
taacaatttcatgtctaaatggaaaagaaagaaatgaggaagaatggaagaaactcttcatggaagcaggctttgaaacctacaaaatatctccttgtac |
100 |
Q |
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| T |
4170742 |
taacaatttcatgtctaaatggaaaagagagaaatgaggaagaatggaagaaactcttcatggaagcaggctttgaaaactacaaaatatctccttgtac |
4170643 |
T |
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| Q |
101 |
tggattattgtctcttattgagatctatccttaaaacactaatgtgaacttaataaatttgtaatgtttggttctgtttgatccagatttgttatgtttt |
200 |
Q |
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| T |
4170642 |
tggattattgtctcttattgagatctatccttaaaacactaatgtgaacttaataaatttgtaatgtttggttctgtttgatccagatttgttatgtttt |
4170543 |
T |
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| Q |
201 |
atgacataggtttgttgttctt |
222 |
Q |
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| T |
4170542 |
atgacataggtttgttgctctt |
4170521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 4161088 - 4161229
Alignment:
| Q |
3 |
acaatttcatgtctaaatggaaaagaaagaaatgaggaagaatggaagaaactcttcatggaagcaggctttgaaacctacaaaatatctccttgtactg |
102 |
Q |
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|||||||||||| | ||||||||||| |||||||||||||||||||| || ||||| || ||||||||||| || |||||||||||||||| ||||| |
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| T |
4161088 |
acaatttcatgtgttaatggaaaagagagaaatgaggaagaatggaaaaagctctttatagaagcaggcttccaagattacaaaatatctccttttactg |
4161187 |
T |
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| Q |
103 |
gattattgtctcttattgagatctatccttaaaacactaatg |
144 |
Q |
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| T |
4161188 |
gattaatgtctcttatagagatctatccttaaaatactaatg |
4161229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 4176566 - 4176443
Alignment:
| Q |
12 |
tgtctaaatggaaaagaaagaaatgaggaagaatggaagaaactcttcatggaagcaggctttgaaacctacaaaatatctccttgtactggattattgt |
111 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || || || ||| || |||||||||| |||||||| |||| |
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| T |
4176566 |
tgtcttaatggaaaagagagaaatgaggaagaatggaagaaactcttcatagaagctggtttccaagactataagatatctcctttgactggatttttgt |
4176467 |
T |
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| Q |
112 |
ctcttattgagatctatccttaaa |
135 |
Q |
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||||||||||||||||||| |||| |
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| T |
4176466 |
ctcttattgagatctatccataaa |
4176443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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