View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_high_97 (Length: 232)
Name: NF1854_high_97
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_high_97 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 27689561 - 27689330
Alignment:
| Q |
1 |
tcaatcccttcagtttcctttgttcctgcattctttgctgctattagattgctacaacaaccctttgaagaactattgcttcagcaaaaaccacattgtg |
100 |
Q |
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| T |
27689561 |
tcaatcccttcagtttcctttgttcctgcattctttgctgctattagattgctacaacaaccctttgaagaactattgcttcagcaaaaaccacattgtg |
27689462 |
T |
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| Q |
101 |
ttgttgctgatatgttctttccatgggcaaccgattcggctgcaaaatttggaattcctaggattgtgttccatggcactagtttcttttcattgtgtgc |
200 |
Q |
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| T |
27689461 |
ttgttgctgatatgttctttccatgggcaaccgattcggctgcaaaatttggaattcctaggattgtgttccatggcactagtttcttttcattgtgtgc |
27689362 |
T |
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| Q |
201 |
ttctcaatgcatgaagaaatatcaaccttaca |
232 |
Q |
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| T |
27689361 |
ttctcaatgcatgaagaaatatcaaccttaca |
27689330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 18988805 - 18988978
Alignment:
| Q |
2 |
caatcccttcagtttcctttgttcctgcattctttgctgctattagattgctacaacaaccctttgaagaactattgcttcagcaaaaaccacattgtgt |
101 |
Q |
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| T |
18988805 |
caatccctacagtttccctggttcctacattctttactgctactacattgctttaacaaccctttgaagaactactgcttcaacaaaaaccacattgcat |
18988904 |
T |
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| Q |
102 |
tgttgctgatatgttctttccatgggcaaccgattcggctgcaaaatttggaattcctaggattgtgttccatg |
175 |
Q |
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| T |
18988905 |
tgttgctgatatgttctttccacgggcaactgattctgcagcaaaagttggtattcctacgattgtattccatg |
18988978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 19001249 - 19001359
Alignment:
| Q |
101 |
ttgttgctgatatgttctttccatgggcaaccgattcggctgcaaaatttggaattcctaggattgtgttccatg--gc-actagtttcttttcattgtg |
197 |
Q |
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||||| |||||||||||||||||| |||||| | ||| |||||||||||||| |||||||||||||| ||||||| || || |||||||||||||||| |
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| T |
19001249 |
ttgtttctgatatgttctttccataggcaacaggttctgctgcaaaatttggtattcctaggattgtattccatgctgctgctggtttcttttcattgtg |
19001348 |
T |
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| Q |
198 |
tgcttctcaat |
208 |
Q |
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|||||| |||| |
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| T |
19001349 |
tgcttcacaat |
19001359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 33391784 - 33391576
Alignment:
| Q |
2 |
caatcccttcagtttcctttgttcctgcattctttgctgctattagattgctacaacaaccctttgaagaactattgcttcagcaaaaaccacattgtgt |
101 |
Q |
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| T |
33391784 |
caatccctacaatttccctgcttcctacattctttactgctactaaattgcttcaacaaccctttgaagaactattgcttcaacaaaaaccacattgcat |
33391685 |
T |
|
| Q |
102 |
tgttgctgatatgttctttccatgggcaaccgattcggctgcaaaatttggaattcctaggattgtgttccatggcactagtttcttttcattgtgtgct |
201 |
Q |
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| T |
33391684 |
tgttgctgatatgttctttccatgggcaactgattctgctacaaaatttggtattcctaggattgtattccatgccactggtttcttttcattgtgtgtt |
33391585 |
T |
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| Q |
202 |
tctcaatgc |
210 |
Q |
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| T |
33391584 |
tcacaatgc |
33391576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 33382368 - 33382474
Alignment:
| Q |
95 |
attgtgttgttgctgatatgttctttccatgggcaaccgattcggctgcaaaatttggaattcctaggattgtgttccatggcactagtttcttttcatt |
194 |
Q |
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| T |
33382368 |
attgtgttgtttctgacacgtttttcgcatggacaactgattcagctgctaaatttggaattcctagacttgtgtttcatggtacttgtttcttctcctt |
33382467 |
T |
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| Q |
195 |
gtgtgct |
201 |
Q |
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||||||| |
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| T |
33382468 |
gtgtgct |
33382474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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