View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_101 (Length: 233)
Name: NF1854_low_101
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_101 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 31346815 - 31346599
Alignment:
| Q |
4 |
acataacaaagaaattgttacaaaacatgtaccaagtctactttcaaacaagaatataagattcataatcatgtatttcgaagatcccaaatatgatgca |
103 |
Q |
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| T |
31346815 |
acataacaaagaaattgttacaaaacatgtaccaagtctactttcaaacaagaatataagattcataatcatgtatttagaagatcccaaatatgatgca |
31346716 |
T |
|
| Q |
104 |
gaactatcattgattagtgggactaaaattgagaatctaagagattaaggtttccattatctacnnnnnnnaaatatgtcttaatattgagcagtgttct |
203 |
Q |
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| T |
31346715 |
gaacaatcattgattactggaactaaaattgagaatcgaatagattaaggtttccattatctacttttttgaaatatgtattaatattgagcagttttct |
31346616 |
T |
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| Q |
204 |
gtcctcaacataacttg |
220 |
Q |
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| T |
31346615 |
gtcctcaacataacttg |
31346599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 31399170 - 31399108
Alignment:
| Q |
15 |
aaattgttacaaaacatgtaccaagtctactttcaaacaagaatataagattcataatcatgt |
77 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31399170 |
aaattgttacaaaatatgtaccaagtctacttttaaacaagaatataagattcataatcatgt |
31399108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 31379555 - 31379493
Alignment:
| Q |
15 |
aaattgttacaaaacatgtaccaagtctactttcaaacaagaatataagattcataatcatgt |
77 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
31379555 |
aaattgttacaaaatatgtaccaagtctacttttcgacaagaatataagatttataatcatgt |
31379493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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