View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_109 (Length: 211)
Name: NF1854_low_109
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_109 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 28667892 - 28667722
Alignment:
| Q |
19 |
cctcctcctcctcccctctcgccgccgcaaacttcaacttcaacatgatctattccattagtctctccctcttacaagacatccaaatcctagaaattct |
118 |
Q |
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| T |
28667892 |
cctcctcctcctcccctctcgccgccgcaaacttcaacttcaacatgatctattccattagtctctccctcttacaagacatccaaatcctagaaattct |
28667793 |
T |
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| Q |
119 |
cattgcaattactctcttcataatcattcattctcttagacnnnnnnnccatcatggcctacctatttggc |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28667792 |
cattgcaattactctcttcataatcattcattctcttagacaaaaaaaccatcatggcctacctatttggc |
28667722 |
T |
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