View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_11 (Length: 534)
Name: NF1854_low_11
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_11 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 6 - 505
Target Start/End: Original strand, 3456 - 3948
Alignment:
| Q |
6 |
aaatatatttttgaatgagtacaggctaagtcactgtaatacaaaggaaaaagatataaagcccttttctgttttctaattatacggttctcaagagaag |
105 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3456 |
aaatatatttttgaatgattacaggctaagtca-----atacaaaggaaaaagatataaagcccttttctgttttctaattatacggttttcaagagaag |
3550 |
T |
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| Q |
106 |
aggactctgataatacgatgttcgactggaatataagtaaagtcttataaccgattattgacataaaggccttttttgataaatcaataccaaaattgtt |
205 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
3551 |
aggattctgataatacgatgttcgactggaatataagtaaagtcttataaccgattcttgacataa-ggccttttttgataaatcaatacaaaaattgtt |
3649 |
T |
|
| Q |
206 |
gaaatatgatattacctttgtattcgatcacttgtattgtttcaaaatattatttccaacatttgtgccataaacactaaaatttgattccatattgtca |
305 |
Q |
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|||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3650 |
gaaatatgatattaactttgtattcaataacttgtattgtttcaaaatattatttccaacatttgtgctataaacactaaaatttgattccatattgtca |
3749 |
T |
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| Q |
306 |
atgcttgattacattatttaaaccttttttcttcaaaaaattatttaaaccttttctacttgaaaatgtatgaaacattcaaaatttgaacaaaattctt |
405 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3750 |
atgcttgattatattatttaaaccttttttcttcaaaaaattatttaaaccttttctacttgaaaatgtatgaaacattcaaaatttgaacaaaattctt |
3849 |
T |
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| Q |
406 |
atggaaatccgnnnnnnnnnntatatttataagcaaagaattaagatcttaccgtagcacactttatagacacaatctatgctcctcaattgtccaaatt |
505 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3850 |
atggaaatccg-aaaacaatatatatttataagcaaagaattaagatcttaccgtagcacactttatagacacaatctatgctcctcaattgtccaaatt |
3948 |
T |
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