View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_110 (Length: 209)
Name: NF1854_low_110
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_110 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 4484 - 4656
Alignment:
| Q |
17 |
cctgtggtggattcgaaatttaccgtgaataaacagtatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcgga |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4484 |
cctgtggtggattcgaaatttaccgagaataaacagtatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcgga |
4583 |
T |
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| Q |
117 |
tgttttctttcaaggtccttcgttgttcccgttcacaatctcatgattggactgagtgtccatatgtgcatcc |
189 |
Q |
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| T |
4584 |
tgttttctttcaaggtccttcgttgttcccgttcacaatctcatgattggactgagtgtccatatgtgcatcc |
4656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 19408918 - 19409090
Alignment:
| Q |
17 |
cctgtggtggattcgaaatttaccgtgaataaacagtatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcgga |
116 |
Q |
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| T |
19408918 |
cctgtggtggattcgaaatttaccgagaataaacagtatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcgga |
19409017 |
T |
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| Q |
117 |
tgttttctttcaaggtccttcgttgttcccgttcacaatctcatgattggactgagtgtccatatgtgcatcc |
189 |
Q |
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| T |
19409018 |
tgttttctttcaaggtccttcgttgttcccgttcacaatctcatgattggactgagtgtccatatgtgcatcc |
19409090 |
T |
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Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 51 - 191
Target Start/End: Complemental strand, 9314931 - 9314791
Alignment:
| Q |
51 |
agtatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgttcccgttc |
150 |
Q |
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| T |
9314931 |
agtatccagttgacccatctcttcctgacataaaaaacagcatgtatgccacagatgaattccgcatgtattcattcaaggttcgtccttgttctcgtgc |
9314832 |
T |
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| Q |
151 |
acaatctcatgattggactgagtgtccatatgtgcatcctg |
191 |
Q |
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| T |
9314831 |
atactctcatgattggactgagtgtccttttgtgcatcctg |
9314791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 11688547 - 11688458
Alignment:
| Q |
53 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgt |
142 |
Q |
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| T |
11688547 |
tatccaattgatccatcaattcctgatataagaaacagcatatatgccacagatgaatttcgcatgtattcggtcaaggtccttctttgt |
11688458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 36456162 - 36456241
Alignment:
| Q |
53 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggt |
132 |
Q |
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||||| ||||||||||| |||||| ||| ||||||||||| || ||| ||||||||||| |||| |||||||||||| |
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| T |
36456162 |
tatcctgttgatccatcccttcctgatatcaaaaacagcatatactcaactgatgaatttcgaatgtattctttcaaggt |
36456241 |
T |
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