View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1854_low_114 (Length: 206)

Name: NF1854_low_114
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1854_low_114
NF1854_low_114
[»] chr4 (5 HSPs)
chr4 (21-191)||(54396068-54396238)
chr4 (38-191)||(23596955-23597108)
chr4 (42-190)||(23588107-23588255)
chr4 (133-190)||(9336356-9336413)
chr4 (43-163)||(35132129-35132249)
[»] chr7 (16 HSPs)
chr7 (38-190)||(8017783-8017935)
chr7 (39-178)||(8102325-8102464)
chr7 (43-175)||(17259902-17260034)
chr7 (43-175)||(17267600-17267732)
chr7 (75-175)||(39985307-39985407)
chr7 (43-175)||(7878108-7878240)
chr7 (43-175)||(8581361-8581493)
chr7 (138-172)||(8537700-8537734)
chr7 (126-172)||(8545297-8545343)
chr7 (43-178)||(8575984-8576119)
chr7 (43-178)||(8590296-8590431)
chr7 (128-178)||(8659021-8659071)
chr7 (133-190)||(10494839-10494896)
chr7 (133-190)||(13333833-13333890)
chr7 (43-172)||(27831250-27831379)
chr7 (75-172)||(29582248-29582345)
[»] chr2 (12 HSPs)
chr2 (49-178)||(12245787-12245916)
chr2 (43-178)||(11999066-11999200)
chr2 (43-175)||(12234351-12234482)
chr2 (43-190)||(16657892-16658039)
chr2 (105-178)||(16662429-16662502)
chr2 (117-181)||(5446218-5446282)
chr2 (69-169)||(17648442-17648542)
chr2 (42-166)||(17717061-17717185)
chr2 (75-190)||(43625058-43625173)
chr2 (75-169)||(17718358-17718452)
chr2 (126-175)||(7541887-7541936)
chr2 (126-175)||(14703069-14703118)
[»] chr8 (3 HSPs)
chr8 (49-175)||(12528165-12528291)
chr8 (49-177)||(42325181-42325309)
chr8 (42-103)||(43744549-43744610)
[»] chr1 (2 HSPs)
chr1 (126-191)||(4679015-4679080)
chr1 (55-172)||(15594698-15594815)
[»] chr5 (1 HSPs)
chr5 (129-172)||(28219582-28219625)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 54396238 - 54396068
Alignment:
Q  21 aagattgataagagtcatgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396238 aagattgataagagtcatgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaag 54396139  T
Q  121 agctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgagc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396138 agctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgagc 54396068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 191
Target Start/End: Original strand, 23596955 - 23597108
Alignment:
Q  38 tgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtatt 137  Q
    |||| |||| |||||||||||||| ||||| || |||||||| || |||||||| |||||||| ||||||||||||||||| || ||||| ||||| ||     
T  23596955 tgttgatgatgttgttcttgttggcggatcgactaggattcccaaggttcaacaacttttgcaagatttcttcaatgggaaggaactttgtaagagcatc 23597054  T
Q  138 aaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgagc 191  Q
    ||||||||||| |||||||||||||| ||||| || ||||| || |||||||||    
T  23597055 aaccctgatgaggctgttgcttatggcgctgcagtccaagctgctattttgagc 23597108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 23588107 - 23588255
Alignment:
Q  42 catgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaacc 141  Q
    ||||| |||||||||||||||||||| || |||||||| || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || ||||    
T  23588107 catgatgttgttcttgttggtggatccactaggattcccaaggttcaacaacttttgcaagatttcttcaatggaaaggagctttgtaagagcatcaacc 23588206  T
Q  142 ctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgag 190  Q
    | |||||||||||||| ||||| || || || ||||| || ||||||||    
T  23588207 ccgatgaagctgttgcatatggggcagccgtccaagctgctattttgag 23588255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 9336356 - 9336413
Alignment:
Q  133 gtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgag 190  Q
    |||| ||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||    
T  9336356 gtatcaacccagatgaggctgttgcttatggtgcagctgttcaagctgctattttgag 9336413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 35132249 - 35132129
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| |||||||||||||| || ||  | |||||||| ||||| || ||||| |||||  | || ||||| ||||| ||| | |||||||| ||||||||    
T  35132249 atgatgttgttcttgttggagggtcttctaggattcccaaagtgcagcagctattgcaaaactttttcaaagggaaggagttgtgcaagagcattaaccc 35132150  T
Q  143 tgatgaagctgttgcttatgg 163  Q
     ||||| ||||| ||||||||    
T  35132149 cgatgaggctgtagcttatgg 35132129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 8017783 - 8017935
Alignment:
Q  38 tgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtatt 137  Q
    ||||||||| |||||||||||||| || ||||| || ||||| |||||||| || || ||||| |||||||||||||| ||||||||||||||||||||     
T  8017783 tgttcatgatgttgttcttgttggcggttcaactagaattcccaaagttcagcaactgttgcaagatttcttcaatggtaaagagctttgcaagagtatc 8017882  T
Q  138 aaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgag 190  Q
    ||||| || || ||||||||||||||||| ||||| |||||||| ||||||||    
T  8017883 aacccagacgaggctgttgcttatggtgccgctgtacaagcagcaattttgag 8017935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 8102464 - 8102325
Alignment:
Q  39 gttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtatta 138  Q
    |||||||| ||||||||||||||||| ||||| |||||||| |||||||| || || ||||| || ||||||||||| || ||||| ||||| || || |    
T  8102464 gttcatgatgttgttcttgttggtggttcaactaggattcccaaagttcagcaactgttgcaagacttcttcaatggtaaggagctatgcaaaagcatca 8102365  T
Q  139 accctgatgaagctgttgcttatggtgctgctgttcaagc 178  Q
    |||| || || ||||||||||||||||| |||||||||||    
T  8102364 accccgacgaggctgttgcttatggtgccgctgttcaagc 8102325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 17260034 - 17259902
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||||||  | |||||||| ||||| || || || ||||||||||||||||| || || ||  | |||||||| || |||||    
T  17260034 atgatgttgtccttgttggtggatcttctaggattccgaaagtgcagcaactattgcaggatttcttcaagggtaaggaattatgcaagagcatcaaccc 17259935  T
Q  143 tgatgaagctgttgcttatggtgctgctgttca 175  Q
    |||||| ||||||||||||||||||||||||||    
T  17259934 tgatgaggctgttgcttatggtgctgctgttca 17259902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 17267732 - 17267600
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||| ||  | |||||||| ||||| || || || |||||| | |||||||| ||||| ||  | ||||| ||||| |||||    
T  17267732 atgatgttgtccttgttggtgggtcttctaggattccgaaagtgcagcaactattgcagaacttcttcaaggggaaggaattatgcaaaagtatcaaccc 17267633  T
Q  143 tgatgaagctgttgcttatggtgctgctgttca 175  Q
    |||||| ||||||||||||||||||||||||||    
T  17267632 tgatgaggctgttgcttatggtgctgctgttca 17267600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 39985407 - 39985307
Alignment:
Q  75 attccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttc 174  Q
    |||||||| |||||||| |||||||| |||||||| || || || ||||| |||||||| || || |||||||| |||||||| ||||||||||||||||    
T  39985407 attccaaaggttcaacaacttttgcaagatttctttaacggaaaggagctatgcaagagcataaatcctgatgaggctgttgcatatggtgctgctgttc 39985308  T
Q  175 a 175  Q
    |    
T  39985307 a 39985307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 7878108 - 7878240
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||||||| | |||||||  ||||| || ||||| |||||||| || || || ||||| ||  ||||||  || || |||||    
T  7878108 atgatgttgtacttgttggtggatcatctaggattctcaaagtgcagcagctattgcaggacttttttaaggggaaggatatttgcagtagcatcaaccc 7878207  T
Q  143 tgatgaagctgttgcttatggtgctgctgttca 175  Q
     ||||||||||||||||||||||| ||||||||    
T  7878208 ggatgaagctgttgcttatggtgcagctgttca 7878240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 8581493 - 8581361
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||| ||  | |||||||| |||||   |||||| || ||||| || ||| | ||||| ||  | |||||||| || |||||    
T  8581493 atgatgttgtccttgttggtggttcttctaggattcctaaagtgagacagctattacaggagtttttccaggggaaggaattatgcaagagcatcaaccc 8581394  T
Q  143 tgatgaagctgttgcttatggtgctgctgttca 175  Q
    |||||| ||||||||||||||||||||| ||||    
T  8581393 tgatgaggctgttgcttatggtgctgctattca 8581361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 8537734 - 8537700
Alignment:
Q  138 aaccctgatgaagctgttgcttatggtgctgctgt 172  Q
    |||||||||||||||||||||||||||||||||||    
T  8537734 aaccctgatgaagctgttgcttatggtgctgctgt 8537700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 8545343 - 8545297
Alignment:
Q  126 tgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgt 172  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||||    
T  8545343 tgcaagagcattaaccctgatgaggctgttgcttatggtgcagctgt 8545297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 8576119 - 8575984
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||| ||  | |||||||| |||||   |||||| || |||||  | ||||| ||||| ||  | || ||||| || |||||    
T  8576119 atgatgttgtccttgttggtggttcttctaggattcctaaagtgagacagctattacaggaggttttcaaggggaaggaattatgtaagagcatcaaccc 8576020  T
Q  143 tgatgaagctgttgcttatggtgctgctgttcaagc 178  Q
    |||||| ||||||||||||||||||| ||| |||||    
T  8576019 tgatgaggctgttgcttatggtgctgttgtccaagc 8575984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 8590431 - 8590296
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||| ||  | |||||||| ||||| || ||||| ||||| || || || |  ||||| || |||| ||| || || || ||    
T  8590431 atgatgttgtacttgttggtggttcttctaggattcccaaagtgcagcagctattgcaagacttttttatggggaaggatctttacaatagcatcaatcc 8590332  T
Q  143 tgatgaagctgttgcttatggtgctgctgttcaagc 178  Q
     ||||| ||||||||||||||||| |||||||||||    
T  8590331 agatgaggctgttgcttatggtgcagctgttcaagc 8590296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 8659071 - 8659021
Alignment:
Q  128 caagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagc 178  Q
    ||||||||| ||||| ||||| ||||||||||||||||| ||| |||||||    
T  8659071 caagagtatcaacccagatgaggctgttgcttatggtgcagctcttcaagc 8659021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 10494839 - 10494896
Alignment:
Q  133 gtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgag 190  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||| || || ||||||||    
T  10494839 gtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgag 10494896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 13333833 - 13333890
Alignment:
Q  133 gtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgag 190  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||| || || ||||||||    
T  13333833 gtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgag 13333890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 27831250 - 27831379
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||| ||  |||||||||| ||||| || ||||| |||  ||| || ||||| || || ||  | |||||||| || || ||    
T  27831250 atgatgttgtccttgttggtggctcttcaaggattcccaaagtgcagcagctattggcggactttttcaagggaaaggatttgtgcaagagcatcaatcc 27831349  T
Q  143 tgatgaagctgttgcttatggtgctgctgt 172  Q
    |||||| |||||||||| |||||| |||||    
T  27831350 tgatgaggctgttgcttttggtgcagctgt 27831379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 29582248 - 29582345
Alignment:
Q  75 attccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgt 172  Q
    ||||| ||||| || ||||| ||||| || || ||||| ||||| ||  | |||| ||| || ||||||||||| ||||||||||||||||| |||||    
T  29582248 attcccaaagtgcatcagctattgcaagaatttttcaaggggaaggatttgtgcatgagcatcaaccctgatgaggctgttgcttatggtgcagctgt 29582345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 12245787 - 12245916
Alignment:
Q  49 ttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatga 148  Q
    |||| ||||||||||||||  | |||||||| ||||| |||||||| || ||||| || ||||| ||||| ||  | |||||||| ||||||||||| ||    
T  12245787 ttgtacttgttggtggatcttctaggattcccaaagtccaacagctattacaggactttttcaacgggaaggaattgtgcaagagcattaaccctgacga 12245886  T
Q  149 agctgttgcttatggtgctgctgttcaagc 178  Q
     |||||||||||||| || |||||||||||    
T  12245887 ggctgttgcttatggggcagctgttcaagc 12245916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 11999200 - 11999066
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||| ||||||||||||||  | ||||| ||||| || |||||||| || || || || ||||| ||||| ||| | |||||||| ||||||||    
T  11999200 atgatgttgtacttgttggtggatcttctaggatcccaaa-gtccaacagctattacatgactttttcaacgggaaggagttgtgcaagagcattaaccc 11999102  T
Q  143 tgatgaagctgttgcttatggtgctgctgttcaagc 178  Q
    |||||| ||||| |||||||| || |||||||||||    
T  11999101 tgatgaggctgtagcttatggggcagctgttcaagc 11999066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 12234482 - 12234351
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||||||||| ||| |||| || ||  | |||||||| ||||| || || || ||||||||||| ||||| ||||| ||||| |||||||||||||||||    
T  12234482 atgaagttgtccttattggcgggtcctctaggattcccaaagtgcagcaactattgcaggattttttcaaggggaaggagctgtgcaagagtattaaccc 12234383  T
Q  143 tgatgaagctgttgcttatggtgctgctgttca 175  Q
    ||| || || ||||||||||  || ||||||||    
T  12234382 tga-gaggcggttgcttatgaggcagctgttca 12234351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 190
Target Start/End: Original strand, 16657892 - 16658039
Alignment:
Q  43 atgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccc 142  Q
    |||| ||||||||||| ||||| ||| | |||||||| ||||| ||  | || ||||| || || ||||| || || ||  | ||||| ||||| |||||    
T  16657892 atgacgttgttcttgtgggtggctcatctaggattcccaaagtgcaggatctattgcaagactttttcaagggcaaggatttatgcaaaagtatcaaccc 16657991  T
Q  143 tgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgag 190  Q
     ||||||||||||||||| ||||| ||||||||||| || ||||||||    
T  16657992 ggatgaagctgttgcttacggtgcagctgttcaagctgctattttgag 16658039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 16662429 - 16662502
Alignment:
Q  105 ttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagc 178  Q
    |||||||||||||| ||| | |||||||| || ||||||||||| |||||||||||||| || ||||| |||||    
T  16662429 ttcttcaatgggaaggagttgtgcaagagcatcaaccctgatgaggctgttgcttatggggcagctgtgcaagc 16662502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 5446218 - 5446282
Alignment:
Q  117 aaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagc 181  Q
    ||||||| |||||| || ||||| |||||||||||||| |||||||| || ||||||||||||||    
T  5446218 aaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagc 5446282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 17648442 - 17648542
Alignment:
Q  69 acaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctg 168  Q
    ||||| |||||||| |||||||| || ||||||||||||||  | || || ||||| ||||| || ||||| || ||||| |||||||| ||||||||||    
T  17648442 acaagaattccaaaggttcaacaactattgcaggatttctttgacggaaaggagctatgcaatagcattaatcccgatgaggctgttgcatatggtgctg 17648541  T
Q  169 c 169  Q
    |    
T  17648542 c 17648542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 17717061 - 17717185
Alignment:
Q  42 catgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaacc 141  Q
    ||||| ||||| ||||| || || || || || |||||||| |||||||| || |||||||||||||| ||  | || ||||| |||||||| ||||| |    
T  17717061 catgatgttgtccttgtaggaggttctaccagaattccaaaggttcaacaactattgcaggatttctttaacagaaaggagctatgcaagagcattaatc 17717160  T
Q  142 ctgatgaagctgttgcttatggtgc 166  Q
    | ||||| |||||||| ||||||||    
T  17717161 ccgatgaggctgttgcatatggtgc 17717185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 43625173 - 43625058
Alignment:
Q  75 attccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttc 174  Q
    |||||||||||  ||||||| |||||||| || ||||| ||||| ||    ||| | || || ||||||||||| ||||||||||||||||| ||||| |    
T  43625173 attccaaaagtaaaacagctgttgcaggagtttttcaaggggaaggaatcatgcgaaagcataaaccctgatgaggctgttgcttatggtgcagctgtcc 43625074  T
Q  175 aagcagcgattttgag 190  Q
    | || || ||||||||    
T  43625073 aggctgctattttgag 43625058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 17718358 - 17718452
Alignment:
Q  75 attccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgc 169  Q
    |||||||| |||||||| || | ||||||| |||| || || || || || |||||||| ||||| || ||||| |||||||| |||||||||||    
T  17718358 attccaaaggttcaacaactatggcaggatgtctttaacggaaaggatctatgcaagagcattaatcccgatgaggctgttgcatatggtgctgc 17718452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 7541936 - 7541887
Alignment:
Q  126 tgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttca 175  Q
    |||||||| ||||| |||||||| |||||||||||||| || ||||||||    
T  7541936 tgcaagagcattaatcctgatgaggctgttgcttatggggcagctgttca 7541887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 14703118 - 14703069
Alignment:
Q  126 tgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttca 175  Q
    ||||| || |||||||||||||||||||| |||||||| || ||||||||    
T  14703118 tgcaacagcattaaccctgatgaagctgtagcttatggggcagctgttca 14703069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 12528291 - 12528165
Alignment:
Q  49 ttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatga 148  Q
    |||| ||||||||||| ||  | |||||||| |||||  | ||||| |||||||| || ||||| || || ||| | | |||||| || |||||||||||    
T  12528291 ttgtacttgttggtggctcgtctaggattcccaaagtgaagcagctattgcaggagtttttcaagggcaaggagttatacaagagcatcaaccctgatga 12528192  T
Q  149 agctgttgcttatggtgctgctgttca 175  Q
     ||||||||||||||||| ||||||||    
T  12528191 ggctgttgcttatggtgccgctgttca 12528165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 42325181 - 42325309
Alignment:
Q  49 ttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatga 148  Q
    |||||||||||||||||   |||||||||||||| || ||||| |||||| |||||| |||  |||| || ||||    |||| |  | |||||||||||    
T  42325181 ttgttcttgttggtggaagcacaaggattccaaaggtacaacaacttttgaaggattactttgatggaaaggagccaaacaagggcgtcaaccctgatga 42325280  T
Q  149 agctgttgcttatggtgctgctgttcaag 177  Q
    ||| ||||| | |||||||||||| ||||    
T  42325281 agcagttgcctttggtgctgctgtgcaag 42325309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 43744610 - 43744549
Alignment:
Q  42 catgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcagga 103  Q
    ||||| ||||||||||||||||| ||  | |||||||||||||| ||||| || ||||||||    
T  43744610 catgatgttgttcttgttggtggctcctctaggattccaaaagtacaacaactattgcagga 43744549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 4679015 - 4679080
Alignment:
Q  126 tgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgagc 191  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| ||| | ||||| || |||||||||    
T  4679015 tgcaagagtatcaacccagatgaggctgttgcttatggtgcagctatccaagctgctattttgagc 4679080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 15594815 - 15594698
Alignment:
Q  55 ttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgt 154  Q
    |||||||||| ||  | |||||||| ||||| ||||| || ||| ||||||| ||| | || || ||  | |||| ||| || ||||||||||| |||||    
T  15594815 ttgttggtgggtcttctaggattcccaaagtgcaacaactattgaaggattttttcgagggaaaggaattgtgcatgagcatcaaccctgatgaggctgt 15594716  T
Q  155 tgcttatggtgctgctgt 172  Q
    |||||||||||| |||||    
T  15594715 tgcttatggtgcagctgt 15594698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 28219625 - 28219582
Alignment:
Q  129 aagagtattaaccctgatgaagctgttgcttatggtgctgctgt 172  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||    
T  28219625 aagagcattaaccctgatgaggctgttgcttatggtgcagctgt 28219582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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