View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_12 (Length: 527)
Name: NF1854_low_12
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9452818 - 9453031
Alignment:
| Q |
1 |
taaattagatttggttagataaataaaactttgtcaaaa-aacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggattt |
99 |
Q |
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| T |
9452818 |
taaattagatttggttagaaaaataaaactttgtcaaaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggattt |
9452917 |
T |
|
| Q |
100 |
ttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaacaactagggttc |
199 |
Q |
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| T |
9452918 |
ttcacgaaagcttctagaatgagatggcaacacaccatccattagatcttatatttaatgaatttaccgcttcatcttaaaagagcaacaa-tagggttc |
9453016 |
T |
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| Q |
200 |
ataaacaagtaaata |
214 |
Q |
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||||||||||||||| |
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| T |
9453017 |
ataaacaagtaaata |
9453031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 326 - 513
Target Start/End: Complemental strand, 21546597 - 21546414
Alignment:
| Q |
326 |
tattttataatttctaatgaatatttgacaataaagcattgcaaagcaaacccacctttaatcgctcctaatcagctaccnnnnnnntatctcccattaa |
425 |
Q |
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| T |
21546597 |
tattttataatttctaatgaatatttgacagtaaagcgttgcacatcaaatccacctttaatcgctccta-tcagctgccaaaaaaatatctcccattca |
21546499 |
T |
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| Q |
426 |
tttcccatacattaatttggaagttacacataattttatgtttatggcattcttctcattcagtcatgattactgcaaatcatatttc |
513 |
Q |
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| T |
21546498 |
tttcccatacattaatttggaagttacacatgattttatgtttatggca---ttctcattcagtcatgattgccgcaaatcatatttc |
21546414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21546657 - 21546588
Alignment:
| Q |
1 |
taaattagatttggttagataaataaaactttgtcaaaaaacaatttgagatggcaaagatattttataa |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
21546657 |
taaattagatttggttagataaataaaactttgtcaaaaaacaatttgatatgacaaagatattttataa |
21546588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 71 - 264
Target Start/End: Original strand, 46424083 - 46424267
Alignment:
| Q |
71 |
gaaaaatgctagataccgcgagaggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgct |
170 |
Q |
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|||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46424083 |
gaaaaatgctagatacagcaagagggtttttcacgaaagc-------atgagttgacaacacaccatccattggatcttatatttaatgaattcatcgct |
46424175 |
T |
|
| Q |
171 |
tcatcttaaaagagcaacaactagggttcataaacaagtaaataataataacacaaagcacgcaagtgttttacggccagtaattgcttttaat |
264 |
Q |
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||||||||||||||||||||| | |||| ||||||||||||||| |||| |||||||||| || || ||| |||||||||||| |||||||| |
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| T |
46424176 |
tcatcttaaaagagcaacaac-atggtttttaaacaagtaaataacaatagcacaaagcacacacatgatttccggccagtaatt-cttttaat |
46424267 |
T |
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