View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_16 (Length: 465)
Name: NF1854_low_16
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 2 - 450
Target Start/End: Original strand, 32631615 - 32632078
Alignment:
| Q |
2 |
ggatgtcgaagaatatatccaaattaaaccgcataaaattagatcgtatcaaaagnnnnnnnnaatgacaaatgttaatatgtcaattgttaggttcata |
101 |
Q |
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||||||| || || |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32631615 |
ggatgtccaaaaacatatccaaattaaaccgcataaaattagattgtatcaaaagttttttttaatgacaaatgttaatatgtcaattgttaggttcata |
32631714 |
T |
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| Q |
102 |
ttttatcaattataaggatttgaaccataaacctttaacaattttaatctcttagctcaaccaagtgagctacacatcccctctaaatatatcttataca |
201 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
32631715 |
ttttatcaattataaggatttgaaccatgaacctttaacacttttaatctcttagctcaaccaaatgagctacacatcccctctaaatatatcttacaca |
32631814 |
T |
|
| Q |
202 |
tgcacacaacttatttatattcaattatattagtagactttacaatatatagaca------cacactt---------gcttaattatgtgtatgcttgtt |
286 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
32631815 |
tgcacacaacttatttatattcaattatattagtaaactttactatatatagacatacactcacacttacttaattatcttaattatgtgtatacttgtt |
32631914 |
T |
|
| Q |
287 |
atatgtcagttactggactttcaagtgataaggagagtgcacaagagtatgcttccactggagttggtttgttagctggatcatccatcttgcttctcac |
386 |
Q |
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| T |
32631915 |
atatgctagttactggactttcaagtgataaggagagtgcacaagagtatgcttccactggagttggattgttagctggatcatccatcttgcttctcac |
32632014 |
T |
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| Q |
387 |
agttgtgtgggggacctgtgttattgttggcaagcaaagcttacgaaatgactcacattcttct |
450 |
Q |
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| T |
32632015 |
agttgtgtgggggacctgtgttattgttggcaagcaaagcttacgaaatgactctcattcttct |
32632078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 290 - 450
Target Start/End: Original strand, 32613241 - 32613401
Alignment:
| Q |
290 |
tgtcagttactggactttcaagtgataaggagagtgcacaagagtatgcttccactggagttggtttgttagctggatcatccatcttgcttctcacagt |
389 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
32613241 |
tgtcagtcactggactttcaagtgataaggagagtgcgcaagagtatgcttccactggagttggattattagctggatcatccatcctgcttctcacagt |
32613340 |
T |
|
| Q |
390 |
tgtgtgggggacctgtgttattgttggcaagcaaagcttacgaaatgactcacattcttct |
450 |
Q |
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| T |
32613341 |
tgtgtgggggacctgtgttattgttggcaagcaaagttttaaaaatgactctcattcttct |
32613401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 6227808 - 6227750
Alignment:
| Q |
124 |
aaccataaacctttaacaattttaatctcttagctcaaccaagtgagctacacatcccc |
182 |
Q |
| |
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|||| |||| ||||||| |||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
6227808 |
aaccttaaatctttaactattttaatatcttagctcaaccaagtgagctatccatcccc |
6227750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 3594618 - 3594581
Alignment:
| Q |
144 |
tttaatctcttagctcaaccaagtgagctacacatccc |
181 |
Q |
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| T |
3594618 |
tttaatctcttagctcaaccaagtgagctactcatccc |
3594581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 3587892 - 3587853
Alignment:
| Q |
143 |
ttttaatctcttagctcaaccaagtgagctacacatcccc |
182 |
Q |
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| T |
3587892 |
ttttaatcccttagctcaaccaagtgagctactcatcccc |
3587853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 3572700 - 3572664
Alignment:
| Q |
144 |
tttaatctcttagctcaaccaagtgagctacacatcc |
180 |
Q |
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||||||||||||||||||||||||||| ||| ||||| |
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| T |
3572700 |
tttaatctcttagctcaaccaagtgagttactcatcc |
3572664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 2906353 - 2906396
Alignment:
| Q |
142 |
attttaatctcttagctcaaccaagtgagctacacatcccctct |
185 |
Q |
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| T |
2906353 |
attttaatctcttagttcaaccaagtaagttacacatcccctct |
2906396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 36160076 - 36160031
Alignment:
| Q |
135 |
tttaacaattttaatctcttagctcaaccaagtgagctacacatcc |
180 |
Q |
| |
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||||||| |||||||| | ||||||||||||||||||||| ||||| |
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| T |
36160076 |
tttaacacttttaatcccctagctcaaccaagtgagctacccatcc |
36160031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 42874644 - 42874604
Alignment:
| Q |
144 |
tttaatctcttagctcaaccaagtgagctacacatcccctc |
184 |
Q |
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|||||||| |||||||||||||||||||||| || |||||| |
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| T |
42874644 |
tttaatctgttagctcaaccaagtgagctacccaccccctc |
42874604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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