View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_17 (Length: 462)
Name: NF1854_low_17
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 49170758 - 49171192
Alignment:
| Q |
10 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaagg |
109 |
Q |
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| T |
49170758 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaagg |
49170857 |
T |
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| Q |
110 |
agtggcttgattgacttatgaaaaggggtttgtttcgcaagaatatagtaagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaagg |
209 |
Q |
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| T |
49170858 |
agtggcttgattgacttatgaaaaggggtttgtgtcgcaagaatataataagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaagg |
49170957 |
T |
|
| Q |
210 |
accacatgccaaa-----taatcacaaatttatgttttttcttttctggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacactt |
304 |
Q |
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| T |
49170958 |
accacatgccaaagagtataatcacaaatttatgttttttcttttctggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacactt |
49171057 |
T |
|
| Q |
305 |
ttcttgctcaattgtgattggaaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
404 |
Q |
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| T |
49171058 |
ttcttgctcaattgtgattggcaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaa |
49171157 |
T |
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| Q |
405 |
agcaaagtggtgattaattatattatggcactata |
439 |
Q |
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| T |
49171158 |
aacaaagtggtgattaattatattatggcactata |
49171192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 21 - 442
Target Start/End: Complemental strand, 8421345 - 8420920
Alignment:
| Q |
21 |
atttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgat |
120 |
Q |
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| T |
8421345 |
atttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgat |
8421246 |
T |
|
| Q |
121 |
tgacttatgaaaaggggtttgtttcgcaagaatatagtaagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgcca |
220 |
Q |
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| T |
8421245 |
tgacttatgaaaaggggtttgtgtcgcaagaattgagtaaggtcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgcca |
8421146 |
T |
|
| Q |
221 |
aa-----taatcacaaatttatgttttttcttttctggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacacttttcttgctcaa |
315 |
Q |
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| T |
8421145 |
aagagtataatcacaaatttatgttttt-cttttcaggtctaacaagaggagtttgacgtgagttatgtagagagggtaggttacacttttcttgctcaa |
8421047 |
T |
|
| Q |
316 |
ttgtgattggaaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaaagcaaagtggt |
415 |
Q |
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| T |
8421046 |
ttgtgattggcaatggctttagatgtatttgaaatagcaaggctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaaaacaaagtggt |
8420947 |
T |
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| Q |
416 |
gattaattatattatggcactatacag |
442 |
Q |
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| T |
8420946 |
gattaattatattatggcactatacag |
8420920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 36732736 - 36732895
Alignment:
| Q |
44 |
taaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttatgaaaaggggtttgtt |
143 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||| |
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| T |
36732736 |
taaaaaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaatgagtggcttgatagacttatgataagggg-ctgtg |
36732834 |
T |
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| Q |
144 |
tcgcaagaatatagtaa--gggcttggttgtctctaaaactttgttgtttgcagatagtaa |
202 |
Q |
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||||||| ||||||||| |||| ||||||| |||| |||||||||||||| ||||||||| |
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| T |
36732835 |
tcgcaaggatatagtaaaggggcatggttgtttctagaactttgttgtttgtagatagtaa |
36732895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 24422996 - 24422915
Alignment:
| Q |
10 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattt |
92 |
Q |
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| T |
24422996 |
attattctaggatt-agagattggaatatgggagtaagcaagatagaaaggacatagagtataccttagactcccaagaattt |
24422915 |
T |
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