View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_low_18 (Length: 462)
Name: NF1854_low_18
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 5688506 - 5688155
Alignment:
| Q |
11 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattgcaaagctgttaaatcttctaatgaggtttctagttttctgta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5688506 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattgcaaagctgttaa-tcttctaatgaggtttctagttttctgta |
5688408 |
T |
|
| Q |
111 |
taatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5688407 |
taatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatg |
5688308 |
T |
|
| Q |
211 |
ggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagcacaacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5688307 |
ggttacattattgtaaaataatggatgaaaaagttttgagcactcatcagctgtgcacataaaaaggaatgacaaaagttttctaaaataagcacaacat |
5688208 |
T |
|
| Q |
311 |
ttctaatcaaggctgctcctcaaatctgttttgcatattaatatccccataaa |
363 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5688207 |
ttctaatcaaggctgctcctcaaacctgttttgcatattaatatccccataaa |
5688155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 91 - 287
Target Start/End: Original strand, 5178574 - 5178768
Alignment:
| Q |
91 |
gaggtttctagttttctgtataatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
190 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178574 |
gaggtttctagttttctgtttaatgtaataattagttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
5178673 |
T |
|
| Q |
191 |
ttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
287 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
5178674 |
ttgtaaa--atgtgtttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5178768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 91 - 287
Target Start/End: Original strand, 5280389 - 5280583
Alignment:
| Q |
91 |
gaggtttctagttttctgtataatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
190 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5280389 |
gaggtttctagttttctgtttaatgtaataattggttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
5280488 |
T |
|
| Q |
191 |
ttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
287 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
5280489 |
ttgtaaa--atgtgtttgtggtttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5280583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 277
Target Start/End: Complemental strand, 5125955 - 5125807
Alignment:
| Q |
129 |
tgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatatgtgtttatgggttacattattgtaaaa |
228 |
Q |
| |
|
|||||| || |||||||||||||| |||||| | ||||| |||| |||||||||||||||| ||| |||||| ||| | |||||||| ||||||||| |
|
|
| T |
5125955 |
tgttacctattgtgtgcctttggtttatttttattttgttatgcttaacaaattccattgtttcataacatatgtatttgttggttacatcattgtaaaa |
5125856 |
T |
|
| Q |
229 |
taatggatgaaaaagttttgagcattcattagcggtgcacataaaaagg |
277 |
Q |
| |
|
| ||||||||||||||||||| || |||||| | |||| |||||||||| |
|
|
| T |
5125855 |
tcatggatgaaaaagttttgaacactcattaccagtgcccataaaaagg |
5125807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 5178369 - 5178425
Alignment:
| Q |
11 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattg |
68 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
5178369 |
taatactctggcttctgaaacat-aggttttggggaaggtaaagcttcagcttgattg |
5178425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 5280183 - 5280239
Alignment:
| Q |
11 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattg |
68 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
5280183 |
taatactctggcttctgaaacat-aggttttggggaaggtaaagcttcagcttgattg |
5280239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 5072453 - 5072410
Alignment:
| Q |
143 |
tgcctttggtgcatttttctgctgttaggctttacaaattccat |
186 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5072453 |
tgcctttggttcatttttcttctgttaggctttacaaattccat |
5072410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 22054073 - 22054171
Alignment:
| Q |
209 |
tgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagcacaac |
308 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || ||||| ||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
22054073 |
tgggttacattattgtaaaatcatggatgataaagttttgaacattcattagcagt--acatataaaggcatggtaaaagttttctaaaacaagcacaac |
22054170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University