View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_19 (Length: 459)
Name: NF1854_low_19
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 442
Target Start/End: Original strand, 38795598 - 38796041
Alignment:
| Q |
14 |
ttctgcactgggttgttcaatggcataaatgtcgggtgaccgtttgattgtgtggagggctcaaattggctcaaagtaccttattgggtgtttccgagct |
113 |
Q |
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| T |
38795598 |
ttctgcagtgggttgttcaatggcgtaaatgtcgggtgaccgtttgattgtgtagagggctcaaattggctcaaagtaccttattgggtgtttcagagct |
38795697 |
T |
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| Q |
114 |
ctttactagtacatgtgatatgtgagtgagtttatacgcctcattgggttttagctttgtgagtggactatagatctgaggattaggtgttggcctaatt |
213 |
Q |
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| T |
38795698 |
ctttaccagtacatgtgatatgtgagtgagtttatacgcctcattgggttttagctttgtgagtggactatagatccgaggattaggtgttggcctaatt |
38795797 |
T |
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| Q |
214 |
tggaacaatagggtttgcaattttatccttgtataaattacaattgtagttgagagggtttgtannnnnnnatgtgcaaaattcgtatgagaagatttgc |
313 |
Q |
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| T |
38795798 |
tggaacaagagggtttgcaattttatccttgtataaattacaattgtagttgagaggttttgtatttttttatgtgcaaaattcgtatgagaagatttgc |
38795897 |
T |
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| Q |
314 |
aattttgtctttgtaaagattgcagattgaataataaaata---------------tttgttgtgagattgttgatgtaggtataaagtgccagaccaca |
398 |
Q |
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| T |
38795898 |
aattttgtctttgtaaagattgcagattgaataataaaatatttgttgtgagattgtttgttgtgagattgttgatgtaggtataaagtgccagaccaca |
38795997 |
T |
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| Q |
399 |
ttcaagttctgaattgtatcttgtatttctttttggcttttgtg |
442 |
Q |
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| T |
38795998 |
ttcaagttctgaattgtatcttgtatttctttttggcttttgtg |
38796041 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 44683373 - 44683294
Alignment:
| Q |
310 |
ttgcaattttgtctttgtaaagattgcagattgaataataaaatattt-gttgtgagattgttgatgtaggtataaagtg |
388 |
Q |
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| T |
44683373 |
ttgcaattttctccttgtaaaaattacatgttgagtaataaaatattttgttgagagattgtagatgtaggtatgaagtg |
44683294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 26191426 - 26191356
Alignment:
| Q |
287 |
gtgcaaaattcgtatgagaagatttgcaattttgtctttgtaaagattgcagattgaataataaaatattt |
357 |
Q |
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| T |
26191426 |
gtgcaaaaattgtatgagatgattttcaattttgtgattgtaaaaattgccgatcgagtaataaaatattt |
26191356 |
T |
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