View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_23 (Length: 440)
Name: NF1854_low_23
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 424
Target Start/End: Original strand, 8515061 - 8515476
Alignment:
| Q |
9 |
aacataggctatgccgatcctcacattgttgtcactgatccattcatgtggaaatgtgaagacggggaaaattttcgaccaacacgaccatttagtttag |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8515061 |
aacataagctatgccgatcctcacattgttgtcactgatccattcatgtggaaatgtgaagatggggaaaattttcgaccaacacgaccatttagtttag |
8515160 |
T |
|
| Q |
109 |
acactagcacaaaattgaagatctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtga |
208 |
Q |
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| T |
8515161 |
acactagcacaaaattgaagctctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtga |
8515260 |
T |
|
| Q |
209 |
acattttcctgaacattgtgattcatcttgcgacagtgctagctacttatgtagacatttaccagggtgttctttttctctaacaagtagttcttgttgt |
308 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8515261 |
acattttcctgaacattgtgattcatcttgtgaaagtgctagctacttatgtagacatttaccaggatgttctttttctctaacaagtagttcttgttgt |
8515360 |
T |
|
| Q |
309 |
tcttattatccaaaagcaagtgaatctttgaggttgatgcttaagtattgtactagttatgctagtgtttattggagggatgttggttttcctcagcctt |
408 |
Q |
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| T |
8515361 |
tcttattatccaaaagcaagtgaatctttgaggttgatgcttaagtattgtactagttatgctagtgtttattggagggatgttggttttcctcagcctt |
8515460 |
T |
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| Q |
409 |
atgatcaagtacctga |
424 |
Q |
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| T |
8515461 |
atgatcaagtacctga |
8515476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 24 - 418
Target Start/End: Original strand, 55371067 - 55371461
Alignment:
| Q |
24 |
gatcctcacattgttgtcactgatccattcatgtggaaatgtgaagacggggaaaattttcgaccaacacgaccatttagtttagacactagcacaaaat |
123 |
Q |
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| T |
55371067 |
gatccacacattgtagtcactgatccattcatgtggaactgtgaagacggtgtcaattatcgaccaacaagaccatttagtttagacacaagcacacgtt |
55371166 |
T |
|
| Q |
124 |
tgaagatctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacattttcctgaaca |
223 |
Q |
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| T |
55371167 |
tcaagctttcgtctcaaaatcagtatattttcttcaattgtagtgaagaaaaagttattgtaaaaccaaagcctgtgttttgtgaacaatttcctgaaca |
55371266 |
T |
|
| Q |
224 |
ttgtgattcatcttgcgacagtgctagctacttatgtagacatttaccagggtgttctttttctctaacaagtagttcttgttgttcttattatccaaaa |
323 |
Q |
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|||||||||||||| || |||||||| || | ||||||||||| |||| |||||||||| | | | |||||||||||||||||||| | || ||| |
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| T |
55371267 |
ctgtgattcatcttgtgatagtgctagttatctttgtagacatttgccagagtgttcttttgcgatgagtggtagttcttgttgttcttataaacctaaa |
55371366 |
T |
|
| Q |
324 |
gcaagtgaatctttgaggttgatgcttaagtattgtactagttatgctagtgtttattggagggatgttggttttcctcagccttatgatcaagt |
418 |
Q |
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|| | |||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
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| T |
55371367 |
gctactgaatcattgaggttgatgcttgagtattgtacaagttatgctagtgtttattggagaaatgttggagctcctcagctttatgatcaagt |
55371461 |
T |
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