View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_25 (Length: 425)
Name: NF1854_low_25
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 1329062 - 1329482
Alignment:
| Q |
18 |
tatatggcaccgacaactgattggaggtgtgtct--gacacgacaccgacacatgtggatatattcaattcaatcattttattctattaagttat---ta |
112 |
Q |
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| T |
1329062 |
tatatggcaccgacaactgattggaggtgtgtctctgacacgacaccgacacatgtggatatattcaattcaatcattttattatattaagttattatta |
1329161 |
T |
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| Q |
113 |
ttgttgtccgcgtgtttgtgtcgttttctataggttagaacgatgaagtggtaatgagttgttttgcaggtggtagagtttgtcacaatgcagcatgatt |
212 |
Q |
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| T |
1329162 |
ttgttgtctgcgtgtttgtgtcgttttttataggttagaacgatgaagtggtcatgagttgttttgcaggtggtagagtttgtcacaatgcagcatgatt |
1329261 |
T |
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| Q |
213 |
atgatgatgaagattgagatttgagatgaactaatcaagcattgcctttactattcggaaataggtatatctaatatattgataactgatttgtgtattt |
312 |
Q |
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| T |
1329262 |
atgatgatgaagattgagatttgagatgaactaatcaagcattgcctttactattcggaaataggtatatctaatatcttgataactgatttgtgtattt |
1329361 |
T |
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| Q |
313 |
aggttttaggcatgtttgatatatggtgcactgacactgaacaagttactg------------tataatctg-gaaaatagaattgattgaaagtaacca |
399 |
Q |
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| T |
1329362 |
aggttctaggcatgtttgatatatggtgcactgacactgaacaagttactgatattgtcacatgataatctgagaaaatagaattgattgaaagtaacca |
1329461 |
T |
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| Q |
400 |
catgtatcggtctgtgctgct |
420 |
Q |
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| T |
1329462 |
catgtatcggtgtgtgttgct |
1329482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 1330402 - 1330458
Alignment:
| Q |
276 |
ggtatatctaatatattgataactgatttgtgtatttaggttttaggcatgtttgat |
332 |
Q |
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| T |
1330402 |
ggtagatctgatatcttgataactgattcgtatatttaagtttcaggcatgtttgat |
1330458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 28547261 - 28547232
Alignment:
| Q |
43 |
ggtgtgtctgacacgacaccgacacatgtg |
72 |
Q |
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| T |
28547261 |
ggtgtgtctgacacgacaccgacacatgtg |
28547232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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