View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_low_28 (Length: 419)
Name: NF1854_low_28
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 38859286 - 38858890
Alignment:
| Q |
7 |
gattatactggtatagtaacggaagaccctgttcaagttcatgtcactaattgtctatttcttggggatgctaatattttaataaaggctgttgaaggtc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38859286 |
gattatactggtatagtaacggaagaccctgttcaagttcatgtcactaattgtctatttcttggggatgctaatattttaataaaggctgctgaaggtc |
38859187 |
T |
|
| Q |
107 |
aaattttgggtttgaacatagtggataatatgttcaatggtgatcctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgatca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38859186 |
aaattttgggtttgaacatagtggataatatgttcaatggtgatcctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgatca |
38859087 |
T |
|
| Q |
207 |
agtggtgattgatagaaacaatgtgaatggtatgggcttgagatcaacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38859086 |
agtggtgattgatagaaacaatgtgaatggtatgggcttgagatcaacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatttt |
38858987 |
T |
|
| Q |
307 |
tcatcagttttggtatttcctaatcggattagtcatgttcaatattcattttatgctcaaggggagccaaaatttgtagcacattctgtgaccaatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38858986 |
tcatcagttttggtatttcctaatcggattagtcatgttcaatattcattttatgctcaaggggagccaaaatttgtagcacattctgtgaccaatg |
38858890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 151 - 357
Target Start/End: Original strand, 15180751 - 15180957
Alignment:
| Q |
151 |
cctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgatcaagtggtgattgatagaaacaatgtgaatggtatgggcttgagat |
250 |
Q |
| |
|
|||||||| || ||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||| || |||| |
|
|
| T |
15180751 |
cctaataataatgttccaattgtaaaattagatgggggatttagtaacattgatcaagtggtgattgataggaacaatgtgattggtatgattttaagat |
15180850 |
T |
|
| Q |
251 |
caacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatttttcatcagttttggtatttcctaatcggattagtcatgttcaata |
350 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||| |||| || |||||||||| |||||||| ||||||||| ||||||||||| |||| || |
|
|
| T |
15180851 |
caacggttgggaagttaagtgtggatggtaatggcacaaaatgggtgggtgatttttcaaatgttttggtgtttcctaataggattagtcattttcagta |
15180950 |
T |
|
| Q |
351 |
ttcattt |
357 |
Q |
| |
|
||||||| |
|
|
| T |
15180951 |
ttcattt |
15180957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University