View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_29 (Length: 417)
Name: NF1854_low_29
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 16426069 - 16426172
Alignment:
| Q |
29 |
aaacttaaaacaactctttgatattcatatttatcgtaaggtgagaagttacaatttttagatagaagttatatttacctaacttcaacttaaaagaaat |
128 |
Q |
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| T |
16426069 |
aaacttaaaacaactctttgatatacatatttattgtaaggtgagaagttacaatttttagatagaagttatatttacctaacttcaacttaaaagaaat |
16426168 |
T |
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| Q |
129 |
attg |
132 |
Q |
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|||| |
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| T |
16426169 |
attg |
16426172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 16426309 - 16426426
Alignment:
| Q |
240 |
gcttagataaaaaatgaacataacttcaaaaatgggactcttttggagctca------tgaaaggtaaacataaatcccaatttattaacttttttattt |
333 |
Q |
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| T |
16426309 |
gcttagataaaaaatgaacataacttcaaaaatgggactcttttggagctcatgaaattgaaaggtaaacataaatcccaatttattaacttttttattt |
16426408 |
T |
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| Q |
334 |
aacttgctaaatccatta |
351 |
Q |
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| T |
16426409 |
aacttgctaaacccatta |
16426426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 16426184 - 16426251
Alignment:
| Q |
115 |
aacttaaaagaaatattgataaaagacatctgccnnnnnnnnnngttacaattctaatgaattaatgg |
182 |
Q |
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| T |
16426184 |
aacttaaaagaaatattgataaatgacatctgccaaaaaaaaaggttacaattctaatgaattaatgg |
16426251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 16426447 - 16426479
Alignment:
| Q |
369 |
caattctatgaaatatttgcagaagcagaaaag |
401 |
Q |
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| T |
16426447 |
caattctatgaaatatttgcagaagcagaaaag |
16426479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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