View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_31 (Length: 407)
Name: NF1854_low_31
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 3427535 - 3427158
Alignment:
| Q |
15 |
caaattccacaaaaatcatagattacaaatttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaa |
114 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427535 |
caaattccacaaaaatcataaattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcacatttagtcaatgatgaatatctacaaaa |
3427436 |
T |
|
| Q |
115 |
gtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgca |
214 |
Q |
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||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
3427435 |
gtacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtgatggtgca |
3427336 |
T |
|
| Q |
215 |
tattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatct |
314 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427335 |
tattcccaagttggtttccctaatcttgatcttcaagttcataattcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatct |
3427236 |
T |
|
| Q |
315 |
tgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3427235 |
tgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctccaaatggcatgcaatttccct |
3427158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 3433726 - 3433349
Alignment:
| Q |
15 |
caaattccacaaaaatcatagattacaaatttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaa |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
3433726 |
caaattccacaaaaatcatagattacaaatttccttcatcaactcaacccttaagggtaagacaagcagcacatttggtcaacgatgaatatctacaaaa |
3433627 |
T |
|
| Q |
115 |
gtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgca |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
3433626 |
atacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtaatttcatacaacaagcaaacatccattgtgcttattgtgatggtgca |
3433527 |
T |
|
| Q |
215 |
tattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatct |
314 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433526 |
tattcccaagttggttttcctaatcttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatct |
3433427 |
T |
|
| Q |
315 |
tgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3433426 |
tgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
3433349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 11896741 - 11897118
Alignment:
| Q |
15 |
caaattccacaaaaatcatagattacaaatttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaa |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
11896741 |
caaaatccacaaaaatcatagattacaaatttcctccattaactcaacccttaagggttagacaagcagcacatttggtcaacgatgaatatcttcaaaa |
11896840 |
T |
|
| Q |
115 |
gtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgca |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | || ||||||||||||||||||||| |
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|
| T |
11896841 |
atacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatgcaacaagcaaacgtccactgtgcttattgtgatggtgca |
11896940 |
T |
|
| Q |
215 |
tattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatct |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
11896941 |
tattcccaagttggcttccctaaccttgatcttcaagttcatggctcttggctcttttttccttttcataggtggtacctttatttctatgaaaggatct |
11897040 |
T |
|
| Q |
315 |
tgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
392 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11897041 |
taggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcgatttccct |
11897118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 11912074 - 11912451
Alignment:
| Q |
15 |
caaattccacaaaaatcatagattacaaatttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |||| || ||||| |||||||| ||||| |
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|
| T |
11912074 |
caaattccacaaaaatcatagattacaaaattccttcatcaaatcaacccttaagggtaagacaagcagcaaatttggttaatgacgaatatcttcaaaa |
11912173 |
T |
|
| Q |
115 |
gtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgca |
214 |
Q |
| |
|
||||| |||||||||| |||| |||||| ||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
11912174 |
atacaagaaagccattgagctcacgaaagcattaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtgatggtgca |
11912273 |
T |
|
| Q |
215 |
tattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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|
| T |
11912274 |
tattcccaagttggtttccctaaccttgatcttcaagttcataactcttggctcttttttccttttcatagatggtacctttatttccatgagagaatct |
11912373 |
T |
|
| Q |
315 |
tgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
392 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11912374 |
tgggtagtttgatcaatgatccagcctttgctttaccattttggaactttgacgctcctaatggcatgcaatttccct |
11912451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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