View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_33 (Length: 397)
Name: NF1854_low_33
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 15397693 - 15397320
Alignment:
| Q |
8 |
cgaagaatatgtgcattccacaatcaatgataagccagtgaacacaacaacgagaatccaatggcaacgccaaactaatatcatgaccaaaatcatcagc |
107 |
Q |
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| T |
15397693 |
cgaaaaatatgtgcattccacaatcaatgataagccagtgaacgcaacaacgagaatccaatggcagtgccaaactaatatcatgaccaaaatcatcagc |
15397594 |
T |
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| Q |
108 |
agtgttgtcaccagcatgactaacacaactgcagtgcctttcattacaaggacaaattcgcttgttaataagcataataaagttcttaaactttgtttac |
207 |
Q |
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| T |
15397593 |
agtgttgtcaccagcatgactaacacaactgcagtgcctttcattacaaggacaaattcgcttgttaataagcataataaagttcttaaactttgtttac |
15397494 |
T |
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| Q |
208 |
tggtgtaagatctagtatatcttcttggttcacttaaaccgttacgttagttatgttcagctattcnnnnnnnnnnnnnnnnnnnnnatgagcatcatat |
307 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
15397493 |
tggtgtaagatctagtatatcttcttggttcaattaaaccgttacgttagttatgttcagctattcttttttcagttttatttttttataagcatcatat |
15397394 |
T |
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| Q |
308 |
atcccacttttatagacaacatacgatcatctaatgagaaagtaagccttcatttgctggttgatgataaactg |
381 |
Q |
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| T |
15397393 |
atcccacttttatagacaacatacgatcatctagtgagaaagtaagccttcatttgctggttgatgataaactg |
15397320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 15389091 - 15388932
Alignment:
| Q |
8 |
cgaagaatatgtgcattccacaatcaatgataagccagtgaacacaacaacgagaatccaatggcaacgccaaactaatatcatgaccaaaatcatcagc |
107 |
Q |
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| T |
15389091 |
cgaaaaatatgtgcattccacaatcaatgataagccagtgaacgcaacaacgagaatccaatggcagtgccaaactaatatcatgaccaaaatcatcagc |
15388992 |
T |
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| Q |
108 |
agtgttgtcaccagcatgactaacacaactgcagtgcctttcattacaaggacaaattcg |
167 |
Q |
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| T |
15388991 |
agtgttgtcaccagcatgactaacacaactgcagtgcctgtcattaaaaggacaaattcg |
15388932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 324
Target Start/End: Complemental strand, 15388888 - 15388860
Alignment:
| Q |
296 |
tgagcatcatatatcccacttttatagac |
324 |
Q |
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| T |
15388888 |
tgagcatcatatatcccacttttatagac |
15388860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 38666312 - 38666393
Alignment:
| Q |
22 |
attccacaatcaatgataagccagtgaacacaacaacgagaatccaatggcaacgccaaactaatatcatgaccaaaatcat |
103 |
Q |
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| T |
38666312 |
attccacaaccaatgataagcaagtgaaggcaagtacaagaatccagtggcagcgccacaccaatatcatgattaaaatcat |
38666393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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