View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_low_39 (Length: 389)
Name: NF1854_low_39
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 37975316 - 37975497
Alignment:
| Q |
12 |
aaaggaagaaactgaatcaaaatcaacaaaatgggtcgatgaatatggtgcaaaatgatcatgtgcatcattatgatgatgtagtgaattcaggttatgg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37975316 |
aaaggaagaaactgaatcaaaatcaacaaaatgggtcgatgactatggtgcaaaatgatcatgtgcatcatcatgatgatgtagtgaattcaggttatgg |
37975415 |
T |
|
| Q |
112 |
tcatggtggtggttttgtcgatcagtactcaaatttaaatgggacaacttctagaaatgatgccgcagtttcttatttctca |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37975416 |
tcatggtggtggttttgtcgatcagtactcaaatttaaatgggacaacttctagaaatgatgccgcagtttcttatttctca |
37975497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 37975629 - 37975728
Alignment:
| Q |
273 |
taggaactgtaaaatcatgatcgtcaggttctatgattaatgtggtagggctcacatatgtaataagggtgtggtcattattgatagcttatcagtgttc |
372 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37975629 |
taggaactctaaaatcatgatcgtcaggttctatgattaatgtggtagggctcacatatgtaataagggtgtggtcattattgatagcttatcagtgttc |
37975728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University