View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1854_low_4 (Length: 624)

Name: NF1854_low_4
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1854_low_4
NF1854_low_4
[»] chr6 (18 HSPs)
chr6 (1-377)||(31108952-31109325)
chr6 (385-602)||(31109508-31109708)
chr6 (178-375)||(33242402-33242595)
chr6 (176-372)||(27441544-27441736)
chr6 (177-374)||(33253913-33254107)
chr6 (275-377)||(9698334-9698436)
chr6 (275-377)||(21279926-21280028)
chr6 (275-374)||(13743222-13743321)
chr6 (275-374)||(13748722-13748821)
chr6 (275-377)||(21293678-21293780)
chr6 (275-374)||(30014343-30014442)
chr6 (275-375)||(3213399-3213499)
chr6 (275-375)||(7292746-7292846)
chr6 (275-375)||(26670010-26670110)
chr6 (280-375)||(7367548-7367643)
chr6 (275-375)||(26466798-26466898)
chr6 (275-375)||(7273336-7273436)
chr6 (280-372)||(24203993-24204085)
[»] chr4 (35 HSPs)
chr4 (178-374)||(55272284-55272476)
chr4 (205-374)||(17619087-17619252)
chr4 (202-375)||(711959-712128)
chr4 (202-372)||(38851515-38851681)
chr4 (202-372)||(35037007-35037173)
chr4 (175-376)||(32728355-32728552)
chr4 (196-375)||(960796-960971)
chr4 (178-377)||(48435487-48435682)
chr4 (171-375)||(46827607-46827807)
chr4 (177-311)||(19880017-19880147)
chr4 (275-375)||(28988472-28988572)
chr4 (193-333)||(36004040-36004175)
chr4 (172-372)||(3756154-3756344)
chr4 (280-375)||(27864563-27864658)
chr4 (275-372)||(27893843-27893940)
chr4 (275-375)||(1771267-1771367)
chr4 (275-375)||(55966347-55966447)
chr4 (275-375)||(33703140-33703240)
chr4 (280-376)||(48463456-48463552)
chr4 (275-374)||(27550309-27550408)
chr4 (275-374)||(35017733-35017831)
chr4 (275-373)||(41878407-41878505)
chr4 (275-372)||(31680904-31681001)
chr4 (275-372)||(43735744-43735841)
chr4 (275-374)||(41847971-41848070)
chr4 (294-376)||(49229684-49229766)
chr4 (275-372)||(41327544-41327641)
chr4 (283-372)||(43514695-43514784)
chr4 (275-375)||(23035979-23036079)
chr4 (275-375)||(25051692-25051792)
chr4 (275-374)||(12496956-12497055)
chr4 (275-374)||(27316714-27316813)
chr4 (275-374)||(45490314-45490413)
chr4 (275-337)||(43949802-43949864)
chr4 (275-371)||(23204779-23204875)
[»] chr3 (24 HSPs)
chr3 (176-375)||(10457798-10457993)
chr3 (175-375)||(4190170-4190366)
chr3 (202-375)||(9434123-9434292)
chr3 (205-374)||(34791829-34791994)
chr3 (229-376)||(25996266-25996413)
chr3 (233-375)||(52627936-52628078)
chr3 (172-374)||(51757593-51757790)
chr3 (275-374)||(36150130-36150229)
chr3 (275-373)||(42394420-42394518)
chr3 (280-374)||(45126934-45127028)
chr3 (275-375)||(46941052-46941152)
chr3 (275-377)||(53581859-53581961)
chr3 (275-373)||(54237097-54237195)
chr3 (275-375)||(24688403-24688503)
chr3 (275-375)||(40808864-40808964)
chr3 (274-374)||(42100688-42100788)
chr3 (275-338)||(51249344-51249407)
chr3 (275-377)||(25413678-25413780)
chr3 (275-375)||(47191027-47191126)
chr3 (275-375)||(54246149-54246249)
chr3 (275-373)||(40480750-40480848)
chr3 (173-247)||(19148895-19148965)
chr3 (291-372)||(27748565-27748646)
chr3 (274-375)||(53273684-53273785)
[»] chr1 (23 HSPs)
chr1 (172-374)||(35003294-35003492)
chr1 (202-376)||(45705823-45705993)
chr1 (204-374)||(48119628-48119794)
chr1 (175-374)||(38335918-38336113)
chr1 (202-375)||(44112676-44112845)
chr1 (178-375)||(45639640-45639833)
chr1 (175-375)||(26585461-26585657)
chr1 (195-374)||(46168383-46168558)
chr1 (178-374)||(35000021-35000213)
chr1 (177-377)||(45427652-45427848)
chr1 (202-376)||(38113127-38113297)
chr1 (196-376)||(41065151-41065325)
chr1 (275-375)||(5489775-5489875)
chr1 (275-377)||(750306-750408)
chr1 (275-374)||(37814778-37814877)
chr1 (275-374)||(43571087-43571186)
chr1 (275-372)||(7447828-7447924)
chr1 (280-372)||(2497568-2497660)
chr1 (275-375)||(48498963-48499063)
chr1 (275-375)||(23989524-23989625)
chr1 (275-375)||(24769500-24769600)
chr1 (275-377)||(4401324-4401427)
chr1 (320-375)||(14427346-14427401)
[»] chr2 (28 HSPs)
chr2 (172-372)||(41281876-41282072)
chr2 (171-375)||(43114556-43114756)
chr2 (168-377)||(18491702-18491907)
chr2 (202-372)||(11825586-11825752)
chr2 (174-375)||(34895645-34895842)
chr2 (178-375)||(16803967-16804160)
chr2 (178-375)||(16843249-16843442)
chr2 (202-375)||(966766-966935)
chr2 (202-374)||(12415392-12415560)
chr2 (202-374)||(12427452-12427620)
chr2 (200-358)||(4451880-4452034)
chr2 (174-310)||(12531567-12531699)
chr2 (202-372)||(4299352-4299518)
chr2 (196-376)||(14285674-14285850)
chr2 (275-373)||(19047158-19047256)
chr2 (278-377)||(8896587-8896686)
chr2 (275-373)||(34817777-34817875)
chr2 (275-374)||(13780736-13780835)
chr2 (275-374)||(16096747-16096846)
chr2 (278-377)||(42026764-42026865)
chr2 (291-372)||(6518486-6518566)
chr2 (275-376)||(30838630-30838731)
chr2 (275-374)||(1750414-1750513)
chr2 (275-377)||(43490402-43490504)
chr2 (275-375)||(12302254-12302354)
chr2 (174-262)||(6518398-6518482)
chr2 (280-332)||(42849864-42849916)
chr2 (275-375)||(43335764-43335864)
[»] chr7 (24 HSPs)
chr7 (177-375)||(40236918-40237112)
chr7 (174-374)||(31513287-31513483)
chr7 (174-373)||(31408537-31408732)
chr7 (174-375)||(33384869-33385067)
chr7 (176-375)||(27535137-27535332)
chr7 (275-374)||(24001013-24001112)
chr7 (275-374)||(42538432-42538531)
chr7 (275-377)||(24280597-24280699)
chr7 (275-372)||(10573751-10573848)
chr7 (275-374)||(42972852-42972951)
chr7 (275-377)||(43317440-43317542)
chr7 (275-372)||(43343625-43343722)
chr7 (280-377)||(44326175-44326272)
chr7 (275-372)||(44416935-44417032)
chr7 (275-375)||(5015394-5015494)
chr7 (275-374)||(5810925-5811024)
chr7 (275-376)||(5194232-5194333)
chr7 (275-376)||(35069719-35069820)
chr7 (275-377)||(9216299-9216400)
chr7 (275-372)||(4638200-4638297)
chr7 (275-338)||(32029818-32029881)
chr7 (307-374)||(39998408-39998475)
chr7 (275-375)||(41861673-41861775)
chr7 (275-374)||(45326020-45326119)
[»] chr5 (12 HSPs)
chr5 (196-377)||(17208071-17208248)
chr5 (202-374)||(32473326-32473494)
chr5 (178-375)||(30622627-30622819)
chr5 (275-375)||(7617132-7617232)
chr5 (275-375)||(38470578-38470678)
chr5 (275-374)||(2614650-2614749)
chr5 (275-374)||(22512305-22512404)
chr5 (275-374)||(41334664-41334763)
chr5 (275-372)||(5256997-5257094)
chr5 (275-375)||(18033981-18034081)
chr5 (275-375)||(33801468-33801568)
chr5 (322-374)||(33855091-33855143)
[»] chr8 (25 HSPs)
chr8 (176-375)||(34304787-34304981)
chr8 (202-375)||(35181515-35181684)
chr8 (205-376)||(18066653-18066820)
chr8 (235-377)||(16603587-16603729)
chr8 (178-311)||(10678060-10678189)
chr8 (196-372)||(33629919-33630091)
chr8 (196-373)||(16358759-16358933)
chr8 (229-375)||(19386520-19386671)
chr8 (275-372)||(26125637-26125734)
chr8 (275-375)||(36743484-36743584)
chr8 (275-374)||(11582766-11582865)
chr8 (275-374)||(29705362-29705461)
chr8 (275-377)||(29800951-29801053)
chr8 (275-377)||(31384661-31384763)
chr8 (280-377)||(20148757-20148854)
chr8 (275-375)||(5754902-5755002)
chr8 (275-375)||(30660743-30660843)
chr8 (275-377)||(2546993-2547095)
chr8 (275-372)||(42295197-42295294)
chr8 (275-376)||(42197436-42197537)
chr8 (275-374)||(1375542-1375641)
chr8 (275-338)||(40528635-40528698)
chr8 (275-373)||(45397317-45397415)
chr8 (275-372)||(3743773-3743870)
chr8 (280-372)||(42699259-42699351)
[»] scaffold0003 (1 HSPs)
scaffold0003 (176-372)||(45625-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (196-374)||(35382-35556)
[»] scaffold0038 (1 HSPs)
scaffold0038 (275-373)||(112656-112754)
[»] scaffold0385 (1 HSPs)
scaffold0385 (275-375)||(11250-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (275-375)||(684-784)
[»] scaffold0187 (2 HSPs)
scaffold0187 (275-377)||(14189-14291)
scaffold0187 (275-377)||(24517-24619)
[»] scaffold0157 (1 HSPs)
scaffold0157 (275-374)||(23422-23521)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 31108952 - 31109325
Alignment:
Q  1 actatcatttgctctttgttttcatatgaatatattacaatgtcattaaattggatgttcaaaatcatagattggtcaatgtaatttgcgcaattgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31108952 actatcatttgctctttgttttcatatgaatatattacaatgttattaaattggatgttcaaaatcatagattggtcaatgtcatttgcgcaattgaaaa 31109051  T
Q  101 taaggagatcaaaactgtggttttgttcnnnnnnnnn-ggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgtaccc 199  Q
    ||||||||||||||||| |||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31109052 taaggagatcaaaactgcggttttgtccaaaaaaaaaaggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgcaccc 31109151  T
Q  200 ctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatga 299  Q
    |||||||||||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || |||    
T  31109152 ctatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaagagggagaggagatgaaagagaaaatgtggtcgtaagttga 31109247  T
Q  300 atttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 377  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  31109248 atttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacattttcctat 31109325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 385 - 602
Target Start/End: Original strand, 31109508 - 31109708
Alignment:
Q  385 taagatgtgaaattttagcaatattttagccatgacaaacaataaagttttaggtatggaatacacatttaacagttgacaacctttaaaatatgctgaa 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |                
T  31109508 taagatgtgaaattttagcaatattttagccatgacaaacaataaagttttaggtatggaatacacatttaacagttgacaaccttga------------ 31109595  T
Q  485 aaaatcagtgatccaaaattt---ttaaataagtttgtcactcataaggtaaaccttgatgatccaaaatgtaattttgtcaacttaaaagaacttatca 581  Q
            ||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109596 --------tgatccaaaatgtaatttaaataagtttgtcactcataaggtaaaccttgatgatccaaaatgtaattttgtcaacttaaaagaacttatca 31109687  T
Q  582 tcaactgtaacaacagagtat 602  Q
    |||||||||||||||||||||    
T  31109688 tcaactgtaacaacagagtat 31109708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 178 - 375
Target Start/End: Complemental strand, 33242595 - 33242402
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  33242595 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 33242500  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||| || | |||||||||||||| |||||| ||| |  | ||||||||||| |||    |||||||||||| | ||||||||||||||||||||    
T  33242499 agaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcct 33242402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 176 - 372
Target Start/End: Complemental strand, 27441736 - 27441544
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| ||||||  || || |||||||||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  27441736 aagagtggtgatacatgtacacacccatgtggcaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagaggagatgaa 27441641  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||||||||| |||| |||||||||||||| |||||||||| |  | ||| || |||| ||| |  |||||||||||||| |||||||||||||||||    
T  27441640 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 177 - 374
Target Start/End: Complemental strand, 33254107 - 33253913
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaa 276  Q
    |||||| ||| ||||||  ||| | |||||||||||||||| ||| ||    ||||||||||||| |||||| ||||| ||| |||||||||||||||||    
T  33254107 agagtggtgatacatgtacacctccatgtggcaatacaccttttatac----ccacacaaaatccggacatgtggcaaagaaaagggagaggagatgaaa 33254012  T
Q  277 -gagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
     || ||||| || | |||||||||||||| ||| || |||||  ||||||||||||| ||| |  ||| |||||||| | |||||||||||||||||||    
T  33254011 agataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttcc 33253913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 9698334 - 9698436
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  9698334 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T
Q  375 tat 377  Q
    |||    
T  9698434 tat 9698436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 21280028 - 21279926
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||||||| ||||||||||||  | |||||| |||  |||||||||||  | |||||| |||||||||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T
Q  375 tat 377  Q
    |||    
T  21279928 tat 21279926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 13743222 - 13743321
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||| | |||||||| |||| | |||||||||||||||||||    
T  13743222 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 13748722 - 13748821
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||| | |||||||| |||| | |||||||||||||||||||    
T  13748722 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 21293678 - 21293780
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||| ||||||||| |||||||||| |  | ||||||||||| | || ||||||||| |||||| |||| ||||||||||||||    
T  21293678 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T
Q  375 tat 377  Q
    |||    
T  21293778 tat 21293780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 30014442 - 30014343
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||||| |||| |||||||||| ||| |||||||| |||  | |||||| |||||||||| ||||| || |||||| |||||||||||||||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 3213499 - 3213399
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||||| |||| |||| ||||||||| |||||||||| |  | ||||||||||| ||||  |||||||| |||||| |||| ||||||||||||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T
Q  375 t 375  Q
    |    
T  3213399 t 3213399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 7292846 - 7292746
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||||||||   ||||||| |||| | ||||| |||||||||||||    
T  7292846 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T
Q  375 t 375  Q
    |    
T  7292746 t 7292746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 26670010 - 26670110
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | |||| |||||| ||||   |||| || |||||| |||||||||||||||||||    
T  26670010 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T
Q  375 t 375  Q
    |    
T  26670110 t 26670110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 7367643 - 7367548
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    |||||||||| |||||||||| ||| ||||||||||||  | |||||| |||| ||||   ||||||| |||| ||||||||| ||||||||||||    
T  7367643 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcct 7367548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 26466898 - 26466798
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||| ||||  | ||||| ||||| |||||  |||| || |||||| |||| ||||||||||||||    
T  26466898 aagataaagtgtggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T
Q  375 t 375  Q
    |    
T  26466798 t 26466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 7273336 - 7273436
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||| | |||||||||| ||| ||||||||| ||  | ||||||||||| |||    |||| || |||||| |||||||||||||||||||    
T  7273336 aagataaagtgtgattgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T
Q  375 t 375  Q
    |    
T  7273436 t 7273436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 24203993 - 24204085
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||||||||| |||||||||| ||| ||||||||||||  | ||||| ||||| ||| |  |||| || |||| | |||||||||||||||||    
T  24203993 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 178 - 374
Target Start/End: Original strand, 55272284 - 55272476
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  55272284 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 55272379  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||||| |||| |||||||||||||| |||||||||| |  ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  55272380 agaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 205 - 374
Target Start/End: Original strand, 17619087 - 17619252
Alignment:
Q  205 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattta 304  Q
    ||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||    
T  17619087 tggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaattta 17619182  T
Q  305 tcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
     |||||||||| |  ||||||||||||| ||| |  |||||||||||| | |||||||||||||||||||    
T  17619183 ccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 202 - 375
Target Start/End: Complemental strand, 712128 - 711959
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| || | |||||||||||    
T  712128 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaaggaagaggagatgaaagagaaagtatgtttgtgagatgaat 712033  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||| |||||||||| |  ||||| ||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  712032 ttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 711959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 38851681 - 38851515
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||| ||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||    
T  38851681 atgtggcaatacatctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaat 38851586  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||||||||| ||| |  ||||||| ||||| | |   ||||||||||||||||| |||||||||||||||    
T  38851585 ttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacatttt 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 35037173 - 35037007
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| |||||||||||| |||||| ||| | |||| |||||||||||    
T  35037173 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagaagaaagaaaaaatatggttgtgagatgaat 35037078  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||| |||||||||| |  ||||||||||||| ||| || |||||| ||||||| || ||||||||||||||    
T  35037077 ttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 175 - 376
Target Start/End: Complemental strand, 32728552 - 32728355
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| ||||||  ||||| ||||||||||||||||||||||| ||    || |||||| | | ||| ||||||||| |||||||||||||||    
T  32728552 aaagagtggtgatacatgtacacccccatgtggcaatacacctcttacacgca----caaaaaatcttaatatgtggcaaggaaaagggagaggagatga 32728457  T
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||| || | ||||||||||||||  ||||| ||| |  ||||||||||||| ||| |  ||||||||||||||||||||||||||||||||||    
T  32728456 aagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 196 - 375
Target Start/End: Original strand, 960796 - 960971
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||||||||| |||||||||||||||||    |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||  | |  | ||    
T  960796 acccctatgtgacaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggataggagatgaaagagaaagtacgattataag 960891  T
Q  296 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||||| |||||| |||||  || || ||||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  960892 atgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcct 960971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 48435487 - 48435682
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| ||||| ||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  48435487 gagtggtgatacatgtacacccccatgtgacaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 48435582  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 377  Q
    | ||||| || | |||||||||||||| ||| || |||||  ||||||||||||| ||| |  ||| |||||||| | ||||||||||||| ||||||||    
T  48435583 ataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttcctat 48435682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 375
Target Start/End: Original strand, 46827607 - 46827807
Alignment:
Q  171 taaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggag 270  Q
    |||||||||||| ||| ||||||  ||| | |||||| |||||| |||||||||    |||||||||||||||||||| |||||| || |||||| ||||    
T  46827607 taaaaaagagtggtgatacatgtacacctccatgtggaaatacatctcttacac----ccacacaaaatcctgacatgtggcaagaaaaagggaggggag 46827702  T
Q  271 atgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatt 370  Q
    |||||||||||| | || | ||||||| |||||| |||||  | | |  ||||| ||||||| ||| || |||||||||||||| |||||||||||||||    
T  46827703 atgaaagagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacatt 46827802  T
Q  371 ttcct 375  Q
    |||||    
T  46827803 ttcct 46827807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 19880147 - 19880017
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaa 276  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  19880147 agagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggaaaggagatgaaa 19880052  T
Q  277 gagaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    |||||||| || | |||||||||||||| ||||||    
T  19880051 gagaaagtatgattgtgagatgaatttaccaaaat 19880017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 28988572 - 28988472
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||| ||||   ||||||| |||||| |||||||||||||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T
Q  375 t 375  Q
    |    
T  28988472 t 28988472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 193 - 333
Target Start/End: Original strand, 36004040 - 36004175
Alignment:
Q  193 tgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgt 292  Q
    |||||||| ||||||||||||| ||||||||| ||     |||||||  ||| ||| ||||||||| ||||||||||||||||||||||||| |||| ||    
T  36004040 tgtacccc-atgtggcaatacatctcttacactcaa----acaaaattttgatatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgt 36004134  T
Q  293 gagatgaatttatcaaaatatccctggtgcatggggtgtat 333  Q
    ||||| ||||||||||||| |||||  |  |||||||||||    
T  36004135 gagataaatttatcaaaatgtccctaatatatggggtgtat 36004175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 172 - 372
Target Start/End: Original strand, 3756154 - 3756344
Alignment:
Q  172 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggaga 271  Q
    |||| |||||| ||| ||||||  || || ||||||||||||| |||||||||    ||||| |||||| ||||||| ||||||||| ||| |||         
T  3756154 aaaatagagtggtgatacatgtacactcccatgtggcaatacaactcttacac----ccacataaaatcatgacatgtggcaaggaaaaggaaga----- 3756244  T
Q  272 tgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattt 371  Q
    ||||||| ||||| || | ||||||| ||||||  ||||||||| |  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||    
T  3756245 tgaaaga-aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 3756343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 27864658 - 27864563
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| |||||||||||||||    
T  27864658 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcct 27864563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 275 - 372
Target Start/End: Original strand, 27893843 - 27893940
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| ||||||||||||    
T  27893843 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

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Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 1771267 - 1771367
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||| |||||| |||||||||| ||||||||||||| ||  | ||||||||||| |||||  |||| || |||||| |||||||||||||||||||    
T  1771267 aagataaaatgtggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T
Q  375 t 375  Q
    |    
T  1771367 t 1771367  T

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Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 55966347 - 55966447
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||| |||||| |||||||||| ||| ||||||||||||  | |||||| |||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  55966347 aagataaattgtggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T
Q  375 t 375  Q
    |    
T  55966447 t 55966447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 33703240 - 33703140
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| |||   |||||  | |||||| |||||||||||||||||||    
T  33703240 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T
Q  375 t 375  Q
    |    
T  33703140 t 33703140  T

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Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 48463456 - 48463552
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    ||||| |||| |||||||||| ||| ||||||||||||  | |||||| |||| |||| ||||||||| |||| | |||| ||||||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttccta 48463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 27550408 - 27550309
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| || ||||||| ||| ||||||||||||  | |||| |||||| |||||| ||||  | |||||| |||||||||||||||||||    
T  27550408 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

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Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 35017831 - 35017733
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||  || || || |||||| |||||||||||||||||||    
T  35017831 aagataaagtgtggttgtgagatgaacttaccaaaatatccct-atacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 41878505 - 41878407
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    ||||||| || |||| |||||||||| ||||||||||||||||  || || ||||||| ||||   ||||||| |||||  ||||||||||||||||||    
T  41878505 aagagaaggtttggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 31681001 - 31680904
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  |  | |||||||| |||||||||||||| |||| | |||| | ||||||||||    
T  31681001 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttt 31680904  T

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Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 43735841 - 43735744
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||| | |||||||||| ||||||||||||| ||  | |||||  |||||||||  ||||| || |||||||||||||||||| |||||    
T  43735841 aagataaagtgtgattgtgagatgaacttatcaaaatatctctaatacatggaatgtataatgagatgtaggaataaaggatgttcatgtaatatttt 43735744  T

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Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 41848070 - 41847971
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||||||||||||| ||| |||||||||  |||||| || ||  ||||||||||||| ||||   ||| |||  ||||||||||| |||||||||||||    
T  41848070 aagagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacattttcc 41847971  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 49229684 - 49229766
Alignment:
Q  294 agatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    ||||||||||| || ||||||| |  ||||||  ||||| ||| |  |||||||||||||||||||||| |||||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttccta 49229766  T

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Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 275 - 372
Target Start/End: Original strand, 41327544 - 41327641
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||||||||||||||  |||||||||||||| |||||| ||| | ||||||  |||||| |||||  ||| ||| |||||| |||  ||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 43514695 - 43514784
Alignment:
Q  283 gtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||||||| |||||||||| ||| ||||||| ||||  | ||||  ||||| |||||| |||| || |||||| |||||||||||||||||    
T  43514695 gtgtggttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 23036079 - 23035979
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  |  || ||||||| ||| |  |||| || ||||||| ||||||||||||||||||    
T  23036079 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T
Q  375 t 375  Q
    |    
T  23035979 t 23035979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 25051792 - 25051692
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||| | |||||||||| ||| ||||||||||||  | ||| ||||||| |||||  |||| || |||||  ||||||||| |||||||||    
T  25051792 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T
Q  375 t 375  Q
    |    
T  25051692 t 25051692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 12497055 - 12496956
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||| | || ||||||| ||| ||||||||| ||  | |||||| |||| |||||| |||| || |||||| ||||||| |||||||||||    
T  12497055 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 27316714 - 27316813
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||||||||||  ||||||||| ||| |||||||||| |  | ||||||||||||||||   |||| || |||||| ||||| | |||||||||||    
T  27316714 aagataaagtgtggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 45490314 - 45490413
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| ||||||||||||||  ||| |||||||  | |||| |||||| ||| | |||||| | ||||   |||||||||||||||||||    
T  45490314 aagataaagtgtggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcc 45490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 43949802 - 43949864
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatg 337  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||    
T  43949802 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatg 43949864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 371
Target Start/End: Original strand, 23204779 - 23204875
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattt 371  Q
    |||| |||||||||| |||| ||||| |||  |||||||||||  | ||| || |||| ||||| ||||| || |||||  ||||||||||||||||    
T  23204779 aagataaagtgtggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 176 - 375
Target Start/End: Original strand, 10457798 - 10457993
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||||||| |||||| |||||  ||||||||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  10457798 aagagtgttgatacatgtataccctcatgtggcaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaa 10457893  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||||| |||| ||||||| |||||| |||||||||| |  ||||||||||||| ||| |  |||||||||||| | ||||||||||||||||||||    
T  10457894 agagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcct 10457993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 175 - 375
Target Start/End: Original strand, 4190170 - 4190366
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||| |||||||||    
T  4190170 aaagagtggtgatacatgtatacccttatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggaaaggagatga 4190265  T
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||| |||| |||||||||||||| ||||||||| ||  | |||  |||||| ||| |  |||||||||||||| |||||||||||||||||||    
T  4190266 aagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 202 - 375
Target Start/End: Complemental strand, 9434292 - 9434123
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||     
T  9434292 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaa 9434197  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||| |||||| |||||  ||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  9434196 ttaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcct 9434123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 205 - 374
Target Start/End: Complemental strand, 34791994 - 34791829
Alignment:
Q  205 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattta 304  Q
    |||||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||    
T  34791994 tggcaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaatta 34791899  T
Q  305 tcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    | ||||| |||||  |||||| ||| || |||    |||||||||||||| |||||||||||||||||||    
T  34791898 ttaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 229 - 376
Target Start/End: Complemental strand, 25996413 - 25996266
Alignment:
Q  229 ccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgggg 328  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |||| |||||||||||||| |||||| ||| |  |  ||||||    
T  25996413 ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatgggg 25996314  T
Q  329 tgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    |||| |||   ||||||||||||||| |||||||||||||||||||||    
T  25996313 tgtacaataagatgtatgattaaagggtgttcatgtaacattttccta 25996266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 52627936 - 52628078
Alignment:
Q  233 acaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgta 332  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||| || | |||||||||||||| |||||||| | |  |||||| ||||||    
T  52627936 acaaaatcctgacatgtggccaggaaaagggagagaagatgaaagagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgta 52628035  T
Q  333 taatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
     ||| | ||||||||||||||| |||||| |||||||||||||    
T  52628036 caataggatgtatgattaaagggtgttcacgtaacattttcct 52628078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 172 - 374
Target Start/End: Complemental strand, 51757790 - 51757593
Alignment:
Q  172 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggaga 271  Q
    ||||| ||||| ||| ||||||  ||||| ||||||||||| |||||||||||    ||||||| |||||||||||| ||||||||| ||| ||||||||    
T  51757790 aaaaatgagtggtgatacatgtacacccc-atgtggcaatatacctcttacac----ccacacacaatcctgacatgtggcaaggaaaaggaagaggaga 51757696  T
Q  272 tgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattt 371  Q
    ||||||||||||| |||| |||||||||| |||  ||||| ||| |  |||||| |||||| ||| |  |||||||||||||| |||| |||||| ||||    
T  51757695 tgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatattt 51757596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 36150229 - 36150130
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||| | ||| |||||||||||||  ||||||| |||||| | |||||||||||||||||    
T  36150229 aagataaagtgtggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 42394420 - 42394518
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||||||||| || |||||| ||||||||||||||||||    
T  42394420 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 45126934 - 45127028
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||    
T  45126934 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 46941152 - 46941052
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||  ||||| || |||||| |||||||||||||||||||    
T  46941152 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T
Q  375 t 375  Q
    |    
T  46941052 t 46941052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 53581859 - 53581961
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  | ||| || |||| |||||| ||||||| |||||  ||||||||||||||||| |    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttttc 53581958  T
Q  375 tat 377  Q
    |||    
T  53581959 tat 53581961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 54237195 - 54237097
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||    
T  54237195 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 24688403 - 24688503
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| |||||| ||||  | |||||| |||||||||||||||||||    
T  24688403 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T
Q  375 t 375  Q
    |    
T  24688503 t 24688503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 40808964 - 40808864
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| |||||  |||| || |||| | |||| ||||||||||||||    
T  40808964 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T
Q  375 t 375  Q
    |    
T  40808864 t 40808864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 42100788 - 42100688
Alignment:
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    ||||| ||| |||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||   |||| || |||||| ||||||||||||||||||    
T  42100788 aaagataaaatgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttc 42100689  T
Q  374 c 374  Q
    |    
T  42100688 c 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 51249407 - 51249344
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatgg 338  Q
    ||||||||||||||| |||||||||||||| |||||||||| |  |||||| ||||||||||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcatgaggtgtataatgg 51249344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 25413780 - 25413678
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | |||  |||||| |||||  |||| || |||||| |||||||||||||||||||    
T  25413780 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T
Q  375 tat 377  Q
    |||    
T  25413680 tat 25413678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 47191027 - 47191126
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||||||||||||| ||  | ||| ||||||| ||||   |||| || |||||| |||||||||||||||||||    
T  47191027 aagataaagtgtggttgtgagatgaacttatcaaaatatctctaatacat-gggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 54246149 - 54246249
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||| ||  | ||| ||||||| |||||  |||| || |||||| |||||||||||||||||||    
T  54246149 aagataaagtgtggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T
Q  375 t 375  Q
    |    
T  54246249 t 54246249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 40480848 - 40480750
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| || |||| |||||    ||||| |||||| ||||||||||||||||||    
T  40480848 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 19148965 - 19148895
Alignment:
Q  173 aaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacat 247  Q
    ||||||| || ||||||||||  ||||| ||||||||||||||| |||||||    ||||||||||| |||||||    
T  19148965 aaaaagaatggtgacacatgtacacccccatgtggcaatacaccacttacac----ccacacaaaattctgacat 19148895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 27748646 - 27748565
Alignment:
Q  291 gtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||||||||| ||| ||||||||||||  | |||  |||||||||||   ||||||| |||| | |||||||||||||||||    
T  27748646 gtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 53273684 - 53273785
Alignment:
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    ||||| ||||| |||| |||||||||| ||| ||||||||||||  | |||||| |||| ||||   | || || |||| ||||||||| ||||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttc 53273783  T
Q  374 ct 375  Q
    ||    
T  53273784 ct 53273785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 172 - 374
Target Start/End: Complemental strand, 35003492 - 35003294
Alignment:
Q  172 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggaga 271  Q
    ||||||||||| ||| |||||   ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||    
T  35003492 aaaaaagagtggtgatacatgcacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggaga 35003397  T
Q  272 tgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattt 371  Q
    ||||||||||||| |||| |||||||||||||| |||||||||| |  || |||||||||| ||| |  |||||||||||||| ||||||||||||||||    
T  35003396 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 35003297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 202 - 376
Target Start/End: Complemental strand, 45705993 - 45705823
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||    
T  45705993 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaat 45705898  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    |||||||||| ||| |  ||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||||||    
T  45705897 ttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacattttccta 45705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 204 - 374
Target Start/End: Complemental strand, 48119794 - 48119628
Alignment:
Q  204 gtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattt 303  Q
    |||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  48119794 gtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaattt 48119699  T
Q  304 atcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    | |||||||||| |  ||||||||||||| ||| |  |||||||||||||| |||||||||||||||||||    
T  48119698 accaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 175 - 374
Target Start/End: Complemental strand, 38336113 - 38335918
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| || |||  |||||||||||||||||||||||||| |    | ||||||||||||||||||| ||||||||| |||||||||||||||    
T  38336113 aaagagtggtgatacttgtacacccctatgtggcaatacacctcttata----ttcacacaaaatcctgacatgtggcaaggaaaagggagaggagatga 38336018  T
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||| |||| |||||||||||||| |||||||||| |  |||||||| |||| |||    |||||||||||||| |||||||||||||||||||    
T  38336017 aagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 202 - 375
Target Start/End: Complemental strand, 44112845 - 44112676
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||     
T  44112845 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaa 44112750  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  44112749 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 44112676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 178 - 375
Target Start/End: Original strand, 45639640 - 45639833
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  |||||  ||||||||||||||||||||||    |||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  45639640 gagtggtgatacatgtacacccccttgtggcaatacacctcttacac----ccacacaaaatcctaacatgtggcaaggaaaagggagaggagatgaaag 45639735  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||| || | |||||||||||||| |||||||||| |  || |||||||||| ||| | ||||||||||||||  ||||||||||||||||||||    
T  45639736 agaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattttcct 45639833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 175 - 375
Target Start/End: Complemental strand, 26585657 - 26585461
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| ||||||  ||||| ||| ||||||||| ||||||||    ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  26585657 aaagagtggtgatacatgtacacccccatgcggcaatacatctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatga 26585562  T
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||| || | | ||||||||||||  ||||||||| |  ||||||||||||| |||  | ||||||||||||| |||||||| |||||||||||    
T  26585561 aagagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacattttcc 26585462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 195 - 374
Target Start/End: Complemental strand, 46168558 - 46168383
Alignment:
Q  195 tacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtga 294  Q
    |||||| ||||||||||||| |||||||||    |||||||||||  ||||||| |||||| || ||||||||||||||||||||||||| |||| ||||    
T  46168558 tacccccatgtggcaatacatctcttacac----ccacacaaaattatgacatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtga 46168463  T
Q  295 gatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||| |||||||||| |  ||||| ||||||| ||| | || |||||||||||| |||||||||||||||||||    
T  46168462 gatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 374
Target Start/End: Original strand, 35000021 - 35000213
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| ||||||||||||| ||||||||| |||    |||||||||||||||| ||||||||| ||||||||||||||||||    
T  35000021 gagtggtgatacatgtacacccccatgtggcaatacatctcttacacccat----acaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 35000116  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||||| |||| ||||||| ||||||||||||| |||||  | ||||  || || ||| || |||||||||||| | |||||||||||||||||||    
T  35000117 agaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 177 - 377
Target Start/End: Original strand, 45427652 - 45427848
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaa 276  Q
    |||||| ||| ||||||  | ||| |||||||||||||||||||     ||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  45427652 agagtggtgatacatgtacatccccatgtggcaatacacctctt----ccatccacacaaaatcctgacatgtggtaaggaaaagggagaggagatgaaa 45427747  T
Q  277 gagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    |||||||| |||| |||||||||| ||| |||||| |||||  ||||||| ||||| ||| |  |||||||||||| | | |||||||||||||||||||    
T  45427748 gagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattttccta 45427847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 202 - 376
Target Start/End: Original strand, 38113127 - 38113297
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||| |||||||||||||||||    |||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||| |||| |||||||||||    
T  38113127 atgtgacaatacacctcttacac----ccacacaaaatcctgacatgtggcaaagaaaagggagaggagatgaaagagtaagtatggttgtgagatgaat 38113222  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    ||| |||||| ||  |  ||||||||||||| ||| |  |||||||||||||| ||||||| |||||||||||||    
T  38113223 ttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattttccta 38113297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 196 - 376
Target Start/End: Complemental strand, 41065325 - 41065151
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| ||||||||||||||||||||||    ||| ||||||||||||||||| ||||||||| ||||||  |||| |||||||||||| |||| |||||    
T  41065325 acccccatgtggcaatacacctcttaca----tccgcacaaaatcctgacatgtggcaaggaaaagggag--gagaggaaagagaaagtatggttgtgag 41065232  T
Q  296 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    ||||| ||| ||||||  ||||  ||||||||||||| ||  |  |||||||||||||| |||||||||||||||||||||    
T  41065231 atgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacattttccta 41065151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 5489875 - 5489775
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  5489875 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T
Q  375 t 375  Q
    |    
T  5489775 t 5489775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 750306 - 750408
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||||||||||  ||||||||||||||||||||||||||| | ||||||||||| |||||  |||| ||   |||| |||||| ||||||||||||    
T  750306 aagataaagtgtggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T
Q  375 tat 377  Q
    |||    
T  750406 tat 750408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 37814877 - 37814778
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||| ||||||||| |||||||||| |  | ||||||||||| ||||  |||||||| |||||| |||| ||||||||||||||    
T  37814877 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 43571087 - 43571186
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||   |||| || |||||| |||||||||||||||||||    
T  43571087 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 7447924 - 7447828
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| |||||||||||||  |  | ||| ||||||| ||||| ||||| || ||||||||||||||||||||||||    
T  7447924 aagataaagtgtggttgtgagatgaacttatcaaaatatctgtaatacat-gggtgtacaatgggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 2497568 - 2497660
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||||||||| |||||||||| ||| |||||||||| |  |  |||||||||| |||||||||||||| |||| | |||| ||||||||||||    
T  2497568 aaagtgtggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 48498963 - 48499063
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | |||| |||||| |||||| ||||  | |||||  |||||||||||||||||||    
T  48498963 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T
Q  375 t 375  Q
    |    
T  48499063 t 48499063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 23989524 - 23989625
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatg-attaaaggatgttcatgtaacattttc 373  Q
    |||| |||||||||| ||||||| |||||| ||||||||||||  | ||| |||| || ||| || |||||| || ||||| ||||||||||||||||||    
T  23989524 aagataaagtgtggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttc 23989623  T
Q  374 ct 375  Q
    ||    
T  23989624 ct 23989625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 24769500 - 24769600
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||| | ||| ||| ||||||||||||  | ||||||||||| |||||| ||||  | |||| | |||||||| ||||||||||    
T  24769500 aagataaagtgtggttgtgataagaacttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T
Q  375 t 375  Q
    |    
T  24769600 t 24769600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 4401427 - 4401324
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaagga-tgttcatgtaacattttc 373  Q
    |||| |||||||||| |||||||||| ||| ||||||||| ||  | ||||||||||| |||| | |||| || |||| || |||||||||| ||||||     
T  4401427 aagataaagtgtggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcattttt 4401328  T
Q  374 ctat 377  Q
    ||||    
T  4401327 ctat 4401324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 14427401 - 14427346
Alignment:
Q  320 tgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    |||||| |||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  14427401 tgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 14427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 172 - 372
Target Start/End: Original strand, 41281876 - 41282072
Alignment:
Q  172 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggaga 271  Q
    ||||||||||| ||| ||||||  ||||| || ||||||||||||||||||||    |||||||||||||||||||| ||||||||| || |||||||||    
T  41281876 aaaaaagagtggtgatacatgtacacccccatatggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagaggaga 41281971  T
Q  272 tgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattt 371  Q
    ||||||||||||| |||| |||||||||| |||||||||| |||||  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||    
T  41281972 tgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 41282071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 171 - 375
Target Start/End: Complemental strand, 43114756 - 43114556
Alignment:
Q  171 taaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggag 270  Q
    |||||| ||||| ||| ||||||  ||||  |||||||||||||||||||||||    |||||||||||||||||| | ||||||||| |||||||||||    
T  43114756 taaaaatgagtggtgatacatgtacaccctcatgtggcaatacacctcttacac----ccacacaaaatcctgacaagtggcaaggaaaagggagaggag 43114661  T
Q  271 atgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatt 370  Q
    |||||||||||||| |||| |||||||||| ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| |||||||||||||||    
T  43114660 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 43114561  T
Q  371 ttcct 375  Q
    |||||    
T  43114560 ttcct 43114556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 168 - 377
Target Start/End: Complemental strand, 18491907 - 18491702
Alignment:
Q  168 atataaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 267  Q
    ||||||||||||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||| ||||| ||||||||| ||||| ||    
T  18491907 atataaaaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctaacatgtggcaaggaaaagggatag 18491812  T
Q  268 gagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaac 367  Q
    |||||||||||| |||| |||| |||||||||||||| |||||| | | |  |||||| |||||| ||| |  |||||||||||||| ||||||||||||    
T  18491811 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaac 18491712  T
Q  368 attttcctat 377  Q
    ||||||||||    
T  18491711 attttcctat 18491702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 11825586 - 11825752
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || | ||||||||||     
T  11825586 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatgattgtgagatgaaa 11825681  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  11825682 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 174 - 375
Target Start/End: Original strand, 34895645 - 34895842
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  34895645 aaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatg 34895740  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    ||||| ||||| || | |||||||||||||| ||| || |||||  ||||||||||||| ||| |  ||| |||||||| | ||||||||||||| ||||    
T  34895741 aaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttc 34895840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 178 - 375
Target Start/End: Complemental strand, 16804160 - 16803967
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  |||||||| || |||||||||||||||||    ||||||||||| |||||||| ||||||||| || | || ||||||||||    
T  16804160 gagtggtgatacatgtacacccctatatgacaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgtgaagagatgaaag 16804065  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||| |||| |||||||||| |||||||||| |||||  |||||||| |||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  16804064 agaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 16803967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 178 - 375
Target Start/End: Complemental strand, 16843442 - 16843249
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  |||||||| || |||||||||||||||||    ||||||||||| |||||||| ||||||||| || | || ||||||||||    
T  16843442 gagtggtgatacatgtacacccctatatgacaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgtgaagagatgaaag 16843347  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||| |||| |||||||||| |||||||||| |||||  |||||||| |||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  16843346 agaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 16843249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 202 - 375
Target Start/End: Original strand, 966766 - 966935
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||| ||||||||||||||||    |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| || | |||||||||||    
T  966766 atgtggaaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggaggggagatgaaagagaaagtatgtttgtgagatgaat 966861  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||| |||||  | | |  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  966862 ttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 966935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 202 - 374
Target Start/End: Original strand, 12415392 - 12415560
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||||||||||||    |||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||| |||| ||||||| ||     
T  12415392 atgtggcaatacacctcttaca----tccacacaaaattctgacatgtagcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagataaaa 12415487  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||| |||||| |||||  ||||||||||||| |||    |||||||||||||| |||||||||||||||||||    
T  12415488 ttaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 202 - 374
Target Start/End: Original strand, 12427452 - 12427620
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||||||||||||    |||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||| |||| ||||||| ||     
T  12427452 atgtggcaatacacctcttaca----tccacacaaaattctgacatgtagcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagataaaa 12427547  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||| |||||| |||||  ||||||||||||| |||    |||||||||||||| |||||||||||||||||||    
T  12427548 ttaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 200 - 358
Target Start/End: Original strand, 4451880 - 4452034
Alignment:
Q  200 ctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatga 299  Q
    ||||||||||||| || ||||||||    |||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |||| |||||||||    
T  4451880 ctatgtggcaatatacttcttacac----ccacacaaaatcctgacatgtgggaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatga 4451975  T
Q  300 atttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgt 358  Q
    ||||| ||||||||||||  |||||  |||||| |||   ||||||||||| |||||||    
T  4451976 atttaccaaaatatccctaatgcatatggtgtacaataagatgtatgattataggatgt 4452034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 12531567 - 12531699
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||| | || ||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  12531567 aaaagagtgatgatacatgtacacctccatatggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatg 12531662  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaa 310  Q
    ||||||||||| |||| |||||||||||||| |||||    
T  12531663 aaagagaaagtatggttgtgagatgaatttaccaaaa 12531699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 4299352 - 4299518
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||| || | |||||||||||    
T  4299352 atgtggcaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagattaaagagtaagtatgattgtgagatgaat 4299447  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||| |||||| ||  |  ||||||| ||||| ||| |  |||||||||||||| ||||||| |||||||||    
T  4299448 ttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 196 - 376
Target Start/End: Complemental strand, 14285850 - 14285674
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||||||||| |||||||||||||||||    ||||| |||||||| ||||| || |||||| ||||||||||||||||||||||||| ||    ||||    
T  14285850 acccctatgtgacaatacacctcttacac----ccacataaaatcctcacatgtggtaaggaaaagggagaggagatgaaagagaaagtatgactctgag 14285755  T
Q  296 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
    ||||||||| |||||||||  |  |  || ||||||| ||| |  |||||||||||||| ||||  ||||| |||||||||    
T  14285754 atgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaatattttccta 14285674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 19047256 - 19047158
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||||||||| || |||||| ||||||||||||||||||    
T  19047256 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 8896587 - 8896686
Alignment:
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 377  Q
    |||||||||| | |||||||||||||| |||||||| |||  || || ||||||| |||||||||| ||| |||||| ||||||||||||||||| ||||    
T  8896587 agaaagtgtgattgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttttctat 8896686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 34817777 - 34817875
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    ||||||||||||||| |||||||||||||| |||||| | | | |||||||||||||| ||||   ||| ||| |||||| ||||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 13780736 - 13780835
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||||||||||||| |||||||||||||||||||||||||||  || |||||||||| ||||   ||| ||| ||||   |||| ||||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 16096846 - 16096747
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| ||||||| || | | ||||||||||||  | |||||||||||||||||  |||| || |||||| |||||||||||||||||||    
T  16096846 aagataaagtgtggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 42026865 - 42026764
Alignment:
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaa--ggatgttcatgtaacattttcct 375  Q
    ||||||||| || |||||||||||||  ||||||||||||  |||  ||| |||| |||||||||||||| ||||  || ||||||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacattttcct 42026766  T
Q  376 at 377  Q
    ||    
T  42026765 at 42026764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 6518486 - 6518566
Alignment:
Q  291 gtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||||||||| ||| |||||| |||||  ||||||||||||| ||| || |||||||||||||| |||||||||||||||||    
T  6518486 gtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagg-tgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 30838731 - 30838630
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| |||   |||||  | |||||| |||||||||||||||||||    
T  30838731 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T
Q  375 ta 376  Q
    ||    
T  30838631 ta 30838630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 1750513 - 1750414
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | ||| ||||||| |||||  |||| || |||||| |||||||||||||||||||    
T  1750513 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 43490402 - 43490504
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||||||||||  ||||||||| ||| ||||||||||||  | ||| | ||||| ||||| ||||| || |||||| ||||||||||||||||| |    
T  43490402 aagataaagtgtggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttc 43490501  T
Q  375 tat 377  Q
    |||    
T  43490502 tat 43490504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 12302254 - 12302354
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | ||| ||||||| |||||  ||||  | |||||| |||||||||||||||||||    
T  12302254 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T
Q  375 t 375  Q
    |    
T  12302354 t 12302354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 6518398 - 6518482
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagg 262  Q
    ||||||||| ||| ||||||  ||| | ||||| |||||||||| ||||||    |||||||||||||||||||| |||||||||||||    
T  6518398 aaaagagtggtgatacatgtacacctccatgtgtcaatacaccttttacac----ccacacaaaatcctgacatgtggcaaggaagagg 6518482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 42849864 - 42849916
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgta 332  Q
    |||||||||| |||||||||| ||||||||||||||||  | |||||||||||    
T  42849864 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgta 42849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 43335764 - 43335864
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||||||| || |||||||||| ||| ||||||||||||  | |||||| |||| ||||   |||| || |||| ||||||||| |||||||||||    
T  43335764 aagataaagtgtagttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T
Q  375 t 375  Q
    |    
T  43335864 t 43335864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 375
Target Start/End: Complemental strand, 40237112 - 40236918
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaa 276  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| || ||||||||||||||    
T  40237112 agagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagaggagatgaaa 40237017  T
Q  277 gagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    |||||| | |||| |||||||||| ||| |||||| |||||  ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||    
T  40237016 gagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttcct 40236918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 174 - 374
Target Start/End: Complemental strand, 31513483 - 31513287
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  |||| |||||||||||||||||||||||    || |||||||||||||||||| ||||||||| ||||||||||||||    
T  31513483 aaaagagtggtgatacatgtacacccttatgtggcaatacacctcttaca----tctacacaaaatcctgacatgtggcaaggaaaagggagaggagatg 31513388  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    ||||||||||| |||| |||||||||||||| |||||||||| |  |||||||||| || ||| |  |||||||||||||  ||||||||||||||||||    
T  31513387 aaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattttc 31513288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 174 - 373
Target Start/End: Original strand, 31408537 - 31408732
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||||| ||||| |||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  31408537 aaaagagtggtgatacatgtacacccccatgtgacaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagaggagatg 31408632  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    ||||||||||| |||| |||| ||||||||| |||||||||| |  |||||||| |||| ||| || |||||||||||||| ||||||||||||||||||    
T  31408633 aaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 174 - 375
Target Start/End: Complemental strand, 33385067 - 33384869
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||||| ||||| ||||||||||||||||| |||    |||||||||||| ||| ||||||||| ||||||||||||||    
T  33385067 aaaagagtggtgatacatgtaaacccccatgtgacaatacacctcttacacccat----acaaaatcctgatatgtggcaaggaaaagggagaggagatg 33384972  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataat-ggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||||||||||| || | |||||||||||||| |||||| |||||  ||||||| || || ||| ||  |||||||||||| |||||||||||||||||||    
T  33384971 aaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacatttt 33384872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 176 - 375
Target Start/End: Original strand, 27535137 - 27535332
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| |||||| | || | ||||||||||||| ||||||||    |||||||||||| |||||||| ||||||||| | ||||||||||||||    
T  27535137 aagagtggtgatacatgtattcctccatgtggcaatacatctcttaca----tccacacaaaattctgacatgtggcaaggaaaaaggagaggagatgaa 27535232  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||||| | || |||||||||| ||| |||||| ||  |    ||||| ||||| ||| || |||||||||||||| ||||||||||||||||||||    
T  27535233 agagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcct 27535332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 24001013 - 24001112
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  24001013 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 42538432 - 42538531
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  42538432 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 24280597 - 24280699
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||||||||||| | |||||||||||||| ||||||||  || ||||||||| |||| ||| |  ||||||| |||||| |||||| ||||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T
Q  375 tat 377  Q
    |||    
T  24280697 tat 24280699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 10573848 - 10573751
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||||||| |||||||| |||  | ||||||||||| ||| | |||||||| |||||| |||| ||||||||||||    
T  10573848 aagataaagtgtggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 42972951 - 42972852
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||| |||||| |||||||||| ||| ||||||||||||  | |||| |||||| |||||| |||| || ||||||||||||| ||||||||||||    
T  42972951 aagataaaatgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 43317542 - 43317440
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||| ||||||| | |||||||||||||||||||||||||||   |||| || |||| ||||   ||||||| |||| | |||||||||||||||||||    
T  43317542 aagagtaagtgtgattgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T
Q  375 tat 377  Q
    |||    
T  43317442 tat 43317440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 372
Target Start/End: Original strand, 43343625 - 43343722
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  | ||||||||||| ||| |  ||||  | |||| |||||||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 44326272 - 44326175
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 377  Q
    |||||||||| |||||||||| ||| ||||||||||||  |  ||| |||||| ||||| |||||||| |||||| |||| |||||||||||| ||||    
T  44326272 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttctat 44326175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 372
Target Start/End: Original strand, 44416935 - 44417032
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  | ||||||||||| ||| |  ||||  | |||| |||||||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 5015494 - 5015394
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | |||| |||||| |||||| ||||  | |||||  |||||||||||||||||||    
T  5015494 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T
Q  375 t 375  Q
    |    
T  5015394 t 5015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 5810925 - 5811024
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  |  || ||||||| |||||  |||| || |||||| || ||||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 5194232 - 5194333
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||| ||||||| | ||||||||||||||||||||||||| |    ||| ||||||| ||||   ||||||| |||| | |||||||||||||||||||    
T  5194232 aagagtaagtgtgattgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 5194331  T
Q  375 ta 376  Q
    ||    
T  5194332 ta 5194333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 35069820 - 35069719
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | |||| |||||| ||||   |||| || |||||  |||||||||||||||||||    
T  35069820 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T
Q  375 ta 376  Q
    ||    
T  35069720 ta 35069719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 9216400 - 9216299
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||| |||||| |||||||||| ||| ||||||||| ||  |||||||| |||| ||| | || || || |||||| |||||||||||||||||||    
T  9216400 aagataaaatgtggttgtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T
Q  375 tat 377  Q
    |||    
T  9216301 tat 9216299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 275 - 372
Target Start/End: Original strand, 4638200 - 4638297
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| ||||| |||| |||||||||| ||| |||||||||| |  |  |||||||||| ||| || ||||||| |||| | |||||||||||||||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 32029818 - 32029881
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatgg 338  Q
    |||| |||||||||| || ||||||||||| ||||||||||||  | ||||||||||| |||||    
T  32029818 aagataaagtgtggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatgg 32029881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  307 aaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||||||||||  | ||||||||||| ||| | |||||||||||||   |||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 41861775 - 41861673
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctgg--tgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| ||||||| || ||| ||||||||| ||    | ||| ||||||||||| |  ||||||| |||||| |||||||||||||||||    
T  41861775 aagataaagtgtggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T
Q  373 cct 375  Q
    |||    
T  41861675 cct 41861673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 45326119 - 45326020
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||| | |||||||||| ||| ||||||||||||  |  |||||||||| ||||  |||||||| |||| | |||| |||||||| |||||    
T  45326119 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcc 45326020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 9e-50; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 17208248 - 17208071
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||||||||| ||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||    
T  17208248 acccctatgtgacaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgag 17208153  T
Q  296 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 377  Q
    ||||||||| |||||| ||| |  ||||||||||||| |||  | |||||||||||||| |||||| |||||||||||||||    
T  17208152 atgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattttcctat 17208071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 202 - 374
Target Start/End: Original strand, 32473326 - 32473494
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||| |||| ||||||||||     
T  32473326 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaa 32473421  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||| ||||||||||||  |||||| |||||| |||    |||||||||||||| |||||||||||||||||||    
T  32473422 ttaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 178 - 375
Target Start/End: Original strand, 30622627 - 30622819
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||  ||||||| ||||||||| || |||||||||||||||    
T  30622627 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaattttgacatgtggcaaggaaaagagagaggagatgaaag 30622722  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||| |||| ||||||| |||||| |||||||||| |  |||||||| | || ||| |  |||||||||||||||||||||||||||||||||||    
T  30622723 agaaagtatggttgtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacattttcct 30622819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 7617232 - 7617132
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | |||||||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  7617232 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T
Q  375 t 375  Q
    |    
T  7617132 t 7617132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 38470678 - 38470578
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||| | |||| ||||||||| |||||||||| |  | ||||||||||| |||||||||||||| |||||| |||| ||||||||||||||    
T  38470678 aagataaagtgtgattgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T
Q  375 t 375  Q
    |    
T  38470578 t 38470578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 2614650 - 2614749
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  2614650 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 22512404 - 22512305
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||| ||||| |||||| |||| || |||||| |||||||||||||||||||    
T  22512404 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 41334664 - 41334763
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||||||||   ||||||| |||||| |||||||||||||||||||    
T  41334664 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 5257094 - 5256997
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| ||||||||||||    
T  5257094 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 18034081 - 18033981
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | ||| ||||||| |||||| |||| || |||||| |||||||||||||||||||    
T  18034081 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T
Q  375 t 375  Q
    |    
T  18033981 t 18033981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 33801568 - 33801468
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | ||||| ||||| |||||  ||||  | ||||||||||||||||||||||||||    
T  33801568 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T
Q  375 t 375  Q
    |    
T  33801468 t 33801468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 33855091 - 33855143
Alignment:
Q  322 catggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||||||||| |||||  |||| || |||||| |||||||||||||||||||    
T  33855091 catggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 176 - 375
Target Start/End: Complemental strand, 34304981 - 34304787
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| ||||||  ||||| |||||||||||||||||||||||    ||| |||||||||||||||| ||||||||| || |||||||||||||    
T  34304981 aagagtggtgatacatgtacacccc-atgtggcaatacacctcttacac----ccaaacaaaatcctgacatgtggcaaggaaaagtgagaggagatgaa 34304887  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||||||||| |||| |||||||||| ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||||||||||||||||||||||||    
T  34304886 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcct 34304787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 202 - 375
Target Start/End: Complemental strand, 35181684 - 35181515
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||     
T  35181684 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaa 35181589  T
Q  302 ttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
    ||| |||||| |||||  ||||||||||||| ||| |  |||||||||||||| ||||||||||||||||||||    
T  35181588 ttaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcct 35181515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 205 - 376
Target Start/End: Original strand, 18066653 - 18066820
Alignment:
Q  205 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattta 304  Q
    ||||||||||||||||||||    ||||| ||||| |||||||| ||||||||| | ||||||||||||||||||||||| |||| |||||||||| |||    
T  18066653 tggcaatacacctcttacac----ccacataaaattctgacatgtggcaaggaaaatggagaggagatgaaagagaaagtatggttgtgagatgaaatta 18066748  T
Q  305 tcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttccta 376  Q
      |||||||||||  | |||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  18066749 ctaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattttccta 18066820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 235 - 377
Target Start/End: Original strand, 16603587 - 16603729
Alignment:
Q  235 aaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtata 334  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||| |||| |||||||||||||| |||||| ||  |  |||||||||||||||    
T  16603587 aaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtata 16603686  T
Q  335 atggaatgtatgattaaaggatgttcatgtaacattttcctat 377  Q
    ||    |||||||||||||| ||| ||||||||||||||||||    
T  16603687 ataaggtgtatgattaaagggtgtgcatgtaacattttcctat 16603729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 10678060 - 10678189
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| ||||||||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  10678060 gagtggtgatacatgtacacccccatgtggcaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 10678155  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    ||||||| |||| |||||||||||||| ||||||    
T  10678156 agaaagtatggttgtgagatgaatttaccaaaat 10678189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 196 - 372
Target Start/End: Original strand, 33629919 - 33630091
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| |||||||||||||||||||||||    | |||||||||  ||||||| ||||| ||| ||||||||||||||||||||||||| | || |||||    
T  33629919 acccccatgtggcaatacacctcttacac----ctacacaaaattttgacatgtggcaaagaaaagggagaggagatgaaagagaaagtatagttgtgag 33630014  T
Q  296 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||||| |||  ||||| |||||  ||||| ||||||| ||||   |||||||||||||| ||||| |||||||||||    
T  33630015 atgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 196 - 373
Target Start/End: Original strand, 16358759 - 16358933
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| || ||||||||||||||||| ||    ||||| |||||| ||||||| |||||| || ||||||||||||||||| ||||||| |||| |||||    
T  16358759 acccccatatggcaatacacctcttatac----ccacataaaatcatgacatgtggcaagaaaaagggagaggagatgaaaaagaaagtatggttgtgag 16358854  T
Q  296 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttc-atgtaacattttc 373  Q
    |||||||||||||||||| | |  |||||||| |||| ||| |  |||||||||||||| | ||| |||||||||||||    
T  16358855 atgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacattttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 19386520 - 19386671
Alignment:
Q  229 ccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatg--- 325  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | || |||||||||||||||||||| || | |  ||||||       
T  19386520 ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatagttgtgagatgaatttatcaaaacattcttaatgcatgaaa 19386619  T
Q  326 --gggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcct 375  Q
      |   ||||||| |  |||||||||||||| ||||||||||||||||||||    
T  19386620 gagaaagtataatagggtgtatgattaaagggtgttcatgtaacattttcct 19386671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 26125734 - 26125637
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| |||||||||||||| |||||| |||| ||||||||||||    
T  26125734 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 36743484 - 36743584
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  36743484 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T
Q  375 t 375  Q
    |    
T  36743584 t 36743584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 11582865 - 11582766
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||| ||||| || |||||| |||||||||||||||||||    
T  11582865 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 29705461 - 29705362
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  | ||||||||||| |||||  ||||  | |||||| |||||||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 29800951 - 29801053
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||||||||| ||||| |||||||| |||| | |||| |||||||||||| |    
T  29800951 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 29801050  T
Q  375 tat 377  Q
    |||    
T  29801051 tat 29801053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 31384763 - 31384661
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| |||||||| |||  | ||||||||||| ||| ||||||| || |||||| ||||||||||| | |||||    
T  31384763 aagataaagtgtggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaatactttcc 31384664  T
Q  375 tat 377  Q
    |||    
T  31384663 tat 31384661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 20148854 - 20148757
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcctat 377  Q
    |||||||||| |||||||||| ||| ||||||||||||  |  ||| |||||| ||||| |||||||| |||||| |||| |||||||||||| ||||    
T  20148854 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttctat 20148757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 5755002 - 5754902
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  |  ||||| |||| ||||| ||||| || |||| | |||||||||||||||||||    
T  5755002 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T
Q  375 t 375  Q
    |    
T  5754902 t 5754902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 30660743 - 30660843
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| || ||||||| ||| ||||||||||||  | ||| ||||||| ||||| |||||  | |||||| |||||||||||||||||||    
T  30660743 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T
Q  375 t 375  Q
    |    
T  30660843 t 30660843  T

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Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 2547095 - 2546993
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | |||| |||||| |||||| ||||  | |||||  |||||||||||||||||||    
T  2547095 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T
Q  375 tat 377  Q
    |||    
T  2546995 tat 2546993  T

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Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 42295294 - 42295197
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||||| ||||| ||||   |||| || |||||| |||||||||||||||||    
T  42295294 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

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Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 42197436 - 42197537
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| | ||||  |||||  |||| || |||| | |||||||||||||||||||    
T  42197436 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T
Q  375 ta 376  Q
    ||    
T  42197536 ta 42197537  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 1375641 - 1375542
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| ||||||| || ||||||| |||||| ||||||||||||  |  |||||||||| ||| |  ||||||| |||| | ||||||||||| |||||||    
T  1375641 aagataaagtgtagttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

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Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 40528635 - 40528698
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatgg 338  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||  |  |||||||||| |||||    
T  40528635 aagagaaagtgtggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaatgg 40528698  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 45397415 - 45397317
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    |||| ||| |||||| |||||||||| |||  |||||||||||  | ||| ||||||| |||||  |||| || |||||| |||||| |||||||||||    
T  45397415 aagataaattgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 3743870 - 3743773
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||| |||||||||| |||||||||| |||||||||||| | |  |  |||||||||||||||| | | |||| |||||| |||  ||| ||||||||    
T  3743870 aagataaagtgtggttgtgagatgaacttatcaaaatatacttaatatatggggtgtataatgggagggatgaataaagggtgtatatggaacatttt 3743773  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 42699351 - 42699259
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    |||||||||| |||||||||| |||  ||||||||| |  | |||  |||||| |||||  |||| || |||||| |||||||||||||||||    
T  42699351 aaagtgtggttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

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Target: scaffold0003 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 176 - 372
Target Start/End: Original strand, 45625 - 45817
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| ||||||  || || |||||||||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  45625 aagagtggtgatacatgtacacacccatgtggcaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagaggagatgaa 45720  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacatttt 372  Q
    ||||||||| |||| |||||||||||||| |||||||||| |  | ||| || |||| ||| |  |||||||||||||| |||||||||||||||||    
T  45721 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

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Target: scaffold0100 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 196 - 374
Target Start/End: Original strand, 35382 - 35556
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| ||||||||||||||||||||||| |||    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||| |||||    
T  35382 acccccatgtggcaatacacctcttacacccat----acaaaatccagacatgcggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgag 35477  T
Q  296 atgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    ||||||||| ||| || |||||  ||||||||||||| |||    |||||||||||| | |||| ||||||||||||||    
T  35478 atgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

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Target: scaffold0038 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 112754 - 112656
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttc 373  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | ||| ||||||| ||||||||||| || |||||| ||||||||||||||||||    
T  112754 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

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Target: scaffold0385 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 11350 - 11250
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  |  |||||||||| |||||  ||||||| |||||  ||||||||| |||||||||    
T  11350 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T
Q  375 t 375  Q
    |    
T  11250 t 11250  T

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Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 784 - 684
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| ||| ||||||||||||  | |||| |||||| ||||   |||| || |||||| |||||||||||||||||||    
T  784 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T
Q  375 t 375  Q
    |    
T  684 t 684  T

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Target: scaffold0187 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 14189 - 14291
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | ||| || |||| |||||  ||||  | |||||| |||||||||||||||||||    
T  14189 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T
Q  375 tat 377  Q
    |||    
T  14289 tat 14291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 24517 - 24619
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||||| |||||||||| |||  |||||||||||  | ||| || |||| |||||  ||||  | |||||| |||||||||||||||||||    
T  24517 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T
Q  375 tat 377  Q
    |||    
T  24617 tat 24619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 23422 - 23521
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatggggtgtataatggaatgtatgattaaaggatgttcatgtaacattttcc 374  Q
    |||| |||||||| | || ||||||| ||| ||||||||| ||  | |||||| |||| |||||| |||| || |||||| ||||||| |||||||||||    
T  23422 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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