View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_40 (Length: 384)
Name: NF1854_low_40
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 4 - 371
Target Start/End: Original strand, 8467535 - 8467902
Alignment:
| Q |
4 |
gagtcttttttctccttcttcggcttctcggcatcagatagtttatacgaagctttgatcttcaccagcttccctctcttggtttgattcttaagctgca |
103 |
Q |
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| T |
8467535 |
gagtcttttttctccttcttcggcttctcggcatcagatagtttatacgaagctttgatcttcaccagcttccctctcttggtttgattcttaagctgca |
8467634 |
T |
|
| Q |
104 |
agcttagtatcttcttgaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgctatagcgtaagggcttgagccattcctctcctttag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467635 |
agcttagtatcttcttgaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgctatagcgtaagggcttgagccattcctctcctttag |
8467734 |
T |
|
| Q |
204 |
agccagtaaagcctccttaaccatctacaaaaataaataagtatacgcttaaatcaaccagtagtttgaaactatattgaaagtttgaaacaattacctc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8467735 |
agccagtaaagcctccttaaccatctacaaaaataaataagtatacgcttaaatcaaccagaagtttgaaactatattgaaagtttgaaacaattacctc |
8467834 |
T |
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| Q |
304 |
aaaatatggaggatgagaagctgttttggtttgtttggaagcttttggtttcatttccttcacaggtt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467835 |
aaaatatggaggatgagaagctgttttggtttgtttggaagcttttggtttcatttccttcacaggtt |
8467902 |
T |
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