View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_41 (Length: 379)
Name: NF1854_low_41
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 25824943 - 25825288
Alignment:
| Q |
19 |
taaaatccagtcggcgcactgtgatttcatcaaactcgtagtcgatttaaacatgaacttaatacgaaagatcacgacgcatcaattgcagctagaaaac |
118 |
Q |
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| T |
25824943 |
taaaatccgatcggcacactgtgatttcatcaaactcgtagttgatttaaacatgaacttaatacgaaagatcacgacgcatcaattgcagctagaaatc |
25825042 |
T |
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| Q |
119 |
agaaaaaagttgaacacatcaaattcgcaaaagaaacaaacctgctacacaagacttgcgctcaaattcaagaacagaaacaggacttaaatcatctgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25825043 |
agaaaaaagttgaacacatcaaattcgcaaaagaaacaaacctgctacacaagacttgcgctcaaattcaagaacagaaacaggacttaaatcatctgat |
25825142 |
T |
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| Q |
219 |
ttgcattcagtttctatcttctgttctgtataacaatttcttcgcttcttcctcgtccttctcttcttcagcatttcaccaactacaacttccttgcaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25825143 |
ttgcattcagtttctatcttctgttctgtataacaatttcttcgcttcttcctcgtccttctcttcttcagcctttcaccaactacaacttccttgcaat |
25825242 |
T |
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| Q |
319 |
tctttgccttcaacaattcacctgcttctgaattaaaacacttctt |
364 |
Q |
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|| ||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
25825243 |
tcattgccttcaacaactcacctgcttctgaatcaaaacacttctt |
25825288 |
T |
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