View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_low_43 (Length: 377)
Name: NF1854_low_43
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_43 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 11848686 - 11848326
Alignment:
| Q |
17 |
tagggattgccaaagtaaccccagaagcattggcattgccgaccagtgtttctgttatctatggatgtaactttggaatcataacaatttgaatatgaat |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11848686 |
tagggattgccaaagtaacccgagaagcattggcattgccgaccagtgtttctgttatttatggatgtaacttgggaatcataacaatttgaatatgaat |
11848587 |
T |
|
| Q |
117 |
ctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaacttattaaaatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11848586 |
ctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaacttattaaaatt |
11848487 |
T |
|
| Q |
217 |
ctcaagataataagtactcaaatatggtgacaacccatcaaaagatacccaacgacgacttaaaatcaaagcatagctacactcactaatatttggtccc |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11848486 |
ctcaagataataagtactcaaatatgatgacaacccatcaaaatatacccaacgacgacttaaaatcaaagcatagctacactcactaatatttggtccc |
11848387 |
T |
|
| Q |
317 |
cttaaaccttgtaacgtcgcattatattctgaaagatgcataggcaatgaagtttcacaac |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11848386 |
cttaaaccttgtaacgtcgcattatattctgaaagatgcataggcaatgaagtttcacaac |
11848326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 7 - 377
Target Start/End: Complemental strand, 11843972 - 11843641
Alignment:
| Q |
7 |
tccaagaatatagggattgccaaagtaaccccagaagcattggcattgccgaccagtgtttctgttatctatggatgtaactttggaatcataacaattt |
106 |
Q |
| |
|
||||| ||| ||||||||||| ||||||| || ||||||| |||| |||||||||| ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
11843972 |
tccaacaatgtagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaactttggaatcataacaat-- |
11843875 |
T |
|
| Q |
107 |
gaatatgaatctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaact |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
11843874 |
----atgaatctgaaggaagttgaaatgtcgaattaaccaa------------aatttcccactcaagcattgctggtgcatactccatattccccaact |
11843791 |
T |
|
| Q |
207 |
tattaaaattctcaagataataagtactcaaatatggtgacaacccatcaaaagatacccaacgacgacttaaaatcaaagcatagctacactcactaat |
306 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||||| | ||| |
|
|
| T |
11843790 |
cattaaaa---------------gtactcaaatatg------acccatcaaaagatatccaattatcacttaaaatcaaagcataactacactgatcaat |
11843712 |
T |
|
| Q |
307 |
atttggtccccttaaaccttgtaacgtcgcattatattctgaaagatgcataggcaatgaagtttcacaac |
377 |
Q |
| |
|
| || || | ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
11843711 |
actttgttcgcttaaaccttgaaacgttgcattatattccgaaagatgcgtaggcaatgaagtttcacaac |
11843641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University