View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1854_low_46 (Length: 351)

Name: NF1854_low_46
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1854_low_46
NF1854_low_46
[»] chr8 (7 HSPs)
chr8 (5-152)||(31547735-31547882)
chr8 (12-152)||(31877211-31877351)
chr8 (229-341)||(31547955-31548067)
chr8 (80-152)||(31544656-31544728)
chr8 (80-152)||(31559518-31559590)
chr8 (80-152)||(31556512-31556584)
chr8 (12-75)||(31561346-31561409)
[»] chr1 (2 HSPs)
chr1 (71-152)||(38624994-38625075)
chr1 (79-152)||(46613935-46614008)
[»] chr5 (3 HSPs)
chr5 (77-152)||(40640267-40640342)
chr5 (79-152)||(32361828-32361901)
chr5 (79-152)||(32379059-32379132)
[»] chr4 (3 HSPs)
chr4 (77-152)||(30161974-30162049)
chr4 (79-152)||(38507768-38507841)
chr4 (80-152)||(55290066-55290138)
[»] chr7 (2 HSPs)
chr7 (78-152)||(30034437-30034511)
chr7 (80-152)||(45868102-45868174)
[»] chr2 (6 HSPs)
chr2 (78-152)||(18229430-18229504)
chr2 (80-152)||(6493518-6493590)
chr2 (80-152)||(8328454-8328526)
chr2 (80-152)||(9596926-9596998)
chr2 (80-152)||(33994623-33994695)
chr2 (80-152)||(21281552-21281623)
[»] chr3 (2 HSPs)
chr3 (80-152)||(32053543-32053615)
chr3 (77-152)||(50683112-50683187)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 31547735 - 31547882
Alignment:
Q  5 ttgcaaactagaaaattgtaaaagtattctaaattgcacgaaagccattagtaagcagcaccaaactatcaccaagcggggatagttcagttgggagagc 104  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  31547735 ttgcaaactagaaaattgtaaaagtattctaaaattcacaaaagcaattagtaagcagcacgaaactatcaccaagcggggatagctcagttgggagagc 31547834  T
Q  105 gtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547835 gtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31547882  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 31877351 - 31877211
Alignment:
Q  12 ctagaaaattgtaaaagtattctaaattgcacgaaagccattagtaagcagcaccaaactatcaccaagcggggatagttcagttgggagagcgtcagac 111  Q
    ||||||||||||||||||||||||| |  ||| |||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  31877351 ctagaaaattgtaaaagtattctaagtctcacaaaagccattactaaacagcaccaaactatcatcaagcggggatagctcagttgggagagcgtcagac 31877252  T
Q  112 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31877251 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31877211  T

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Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 31547955 - 31548067
Alignment:
Q  229 catcttactgatatccttttacacttcctcttttaaatttaagtctgtgtttggcttaaaaattgaagtaaatttgttgagtttctttaataaatatgta 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  31547955 catcttactgatatccttttacacttcctcttttaaatttaagtctgtgtttggcttaaaaattgaagtaaatttgttgagcttcttttacaaatatgta 31548054  T
Q  329 gtttttgtctgtg 341  Q
    |||||||||||||    
T  31548055 gtttttgtctgtg 31548067  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 31544656 - 31544728
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544656 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31544728  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 31559518 - 31559590
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31559590  T

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Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 31556512 - 31556584
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  31556512 gcggggatagctcagttgggagagcgtcagattgaagatctgaaggtcgcgtgtttgatccacgctcaccgca 31556584  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 31561346 - 31561409
Alignment:
Q  12 ctagaaaattgtaaaagtattctaaattgcacgaaagccattagtaagcagcaccaaactatca 75  Q
    ||||||||||||||||||||||||| |  ||| |||||||||| ||| ||||||||||||||||    
T  31561346 ctagaaaattgtaaaagtattctaattctcacaaaagccattactaaacagcaccaaactatca 31561409  T

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Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 38625075 - 38624994
Alignment:
Q  71 tatcaccaagcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625075 tatcaacaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 38624994  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 46613935 - 46614008
Alignment:
Q  79 agcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46613935 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 46614008  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 40640342 - 40640267
Alignment:
Q  77 caagcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640342 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 40640267  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 32361901 - 32361828
Alignment:
Q  79 agcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361901 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32361828  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 32379132 - 32379059
Alignment:
Q  79 agcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379132 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32379059  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 30161974 - 30162049
Alignment:
Q  77 caagcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161974 caagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 30162049  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 38507841 - 38507768
Alignment:
Q  79 agcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507841 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 38507768  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 55290138 - 55290066
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290138 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 55290066  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 30034511 - 30034437
Alignment:
Q  78 aagcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034511 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 30034437  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 45868174 - 45868102
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868174 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 45868102  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 18229430 - 18229504
Alignment:
Q  78 aagcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229430 aagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 18229504  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 6493518 - 6493590
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 6493590  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 8328526 - 8328454
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328526 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 8328454  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 9596926 - 9596998
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596926 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 9596998  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 33994695 - 33994623
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994695 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 33994623  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 21281623 - 21281552
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||||||||||    
T  21281623 gcggggatagctcagttgggagagcctcaga-tgaagatccgaaggtcgcgtgtttgatccatgctcaccgca 21281552  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 32053615 - 32053543
Alignment:
Q  80 gcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053615 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32053543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 50683187 - 50683112
Alignment:
Q  77 caagcggggatagttcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 152  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50683187 caagctgggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 50683112  T

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