View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_48 (Length: 344)
Name: NF1854_low_48
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 3819549 - 3819238
Alignment:
| Q |
18 |
aggtttacggcgttgcccgccgtccacgaccttcttggaacgcagatcaccctgtggaatacatccaatgcgacatcaccgatccaaacgacgccaccac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3819549 |
aggtttacggcgttgcccgccgtccacgaccttcttggaacgcagatcaccctgtggaatacatccaatgcgacatcaccgatccaaacgacgccaccac |
3819450 |
T |
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| Q |
118 |
caaactctccgtcctcactgacgttacccatgtcttctacgtctgttgggccagccgtcccaccgaagctgaaaactgtgaaatcaacggcactatgctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3819449 |
caaactctccgtcctcactgacgttacccatgtcttctacgtctgttgggccagccgtcccaccgaagctgaaaactgtgaaatcaacggcactatgctc |
3819350 |
T |
|
| Q |
218 |
aaaaacgtcctcactgcagtcattccaaacgctcccaatctccgacatgtgtcaatccaaaccggcggtaagcactatgtaggaccctttgaatcatttg |
317 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3819349 |
aaaaacgccctcactgcagtcattccaaacgctcccaatctccgtcatgtgtcaattcaaaccggcggtaagcactatgtaggaccctttgaatcattcg |
3819250 |
T |
|
| Q |
318 |
gcaagatcaagt |
329 |
Q |
| |
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|||||||||||| |
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| T |
3819249 |
gcaagatcaagt |
3819238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 47338328 - 47338639
Alignment:
| Q |
18 |
aggtttacggcgttgcccgccgtccacgaccttcttggaacgcagatcaccctgtggaatacatccaatgcgacatcaccgatccaaacgacgccaccac |
117 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47338328 |
aggtttacggcgttgcccgccgttcacgaccttcctggaacgcagatcatcctgtggaatacatccaatgcgacatcaccgatccaaacgacgccaccac |
47338427 |
T |
|
| Q |
118 |
caaactctccgtcctcactgacgttacccatgtcttctacgtctgttgggccagccgtcccaccgaagctgaaaactgtgaaatcaacggcactatgctc |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47338428 |
caaactctccgtcctcactgacgttacacatgtcttctacgtctgttgggccagccgtcccaccgaagctgaaaactgtgaaatcaacggcgctatgctc |
47338527 |
T |
|
| Q |
218 |
aaaaacgtcctcactgcagtcattccaaacgctcccaatctccgacatgtgtcaatccaaaccggcggtaagcactatgtaggaccctttgaatcatttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47338528 |
aaaaacgtcctcactgcagtcattccaaacgctcccaatctccgtcatgtgtcaattcaaaccggcggtaagcactatgtaggaccctttgaatcattcg |
47338627 |
T |
|
| Q |
318 |
gcaagatcaagt |
329 |
Q |
| |
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|||||||||||| |
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| T |
47338628 |
gcaagatcaagt |
47338639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 309
Target Start/End: Original strand, 47346803 - 47347089
Alignment:
| Q |
23 |
tacggcgttgcccgccgtccacgaccttcttggaacgcagatcaccctgtggaatacatccaatgcgacatcaccgatccaaacgacgccaccaccaaac |
122 |
Q |
| |
|
||||||||||| || || |||||||| || |||||||| ||||| || | ||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
47346803 |
tacggcgttgcacggcggccacgaccctcctggaacgccgatcatccaatcgaatacatccaatgcgacatcaccgatccaaacgaaacccaaaccaaac |
47346902 |
T |
|
| Q |
123 |
tctccgtcctcactgacgttacccatgtcttctacgtctgttgggccagccgtcccaccgaagctgaaaactgtgaaatcaacggcactatgctcaaaaa |
222 |
Q |
| |
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||||||| ||||||||||| || || |||||||||||| |||| | ||||||| | ||||| |||||||||||| ||||| || | ||| | || |
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| T |
47346903 |
tctccgttctcactgacgtcacacacatcttctacgtctcttggagtaaccgtccctctgaagccgaaaactgtgaagtcaacagcgcaatgttacgtaa |
47347002 |
T |
|
| Q |
223 |
cgtcctcactgcagtcattccaaacgctcccaatctccgacatgtgtcaatccaaaccggcggtaagcactatgtaggaccctttga |
309 |
Q |
| |
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||| ||||| || || || |||||||| || |||||||| || |||||| | |||||||| || || |||||| ||||||| ||||| |
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| T |
47347003 |
cgtactcaccgccgttatcccaaacgcaccgaatctccgccacgtgtcacttcaaaccggtggaaaacactatttaggaccgtttga |
47347089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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