View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_49 (Length: 343)
Name: NF1854_low_49
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_49 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 5950979 - 5951321
Alignment:
| Q |
1 |
tatacattcctagcagaacctgcaggaaaagaagaataggaaacgttgctgcggttaaataggacgaagcatgtagtcatagagatttaaaacaaaattt |
100 |
Q |
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| T |
5950979 |
tatacattcctagcagaacctgcaggaaaagaagaataggaaacgttgctgcggttaaataggacgaagcatgtagtcatagagatttaaaacaaaattt |
5951078 |
T |
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| Q |
101 |
tctctacaacgaaccatatatagctttgagtaataagaaaacatcaggtaccgttcttgtcaacaatctgcactttgagaaagagagcatcaccgtcagg |
200 |
Q |
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| T |
5951079 |
tctctacaacgaaccagatatagctttgagtaataagaaaacatcaggtaccgttcttgtcaacaatctgcactttgagaaagagagcatcaccgtcagg |
5951178 |
T |
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| Q |
201 |
atttcgcttcctagttattgacattgaagccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaatggatcctgcatacca |
300 |
Q |
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| T |
5951179 |
atttcgcttcctagttattgacattgaagccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaatggatcctgcatacca |
5951278 |
T |
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| Q |
301 |
cttactgttatcgatgattcatcatcagacacaagaaatggat |
343 |
Q |
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| T |
5951279 |
cttactgttatcgatgattcatcatcagacacaagaaatggat |
5951321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 18077537 - 18077616
Alignment:
| Q |
206 |
gcttcctagttattgacattgaagccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaat |
285 |
Q |
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| T |
18077537 |
gcttcccaattattgacattgaagtcctaagtgaatcgcttctcaattgaagtttatccatcacagtgtaatttaaaaat |
18077616 |
T |
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