View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_53 (Length: 330)
Name: NF1854_low_53
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_53 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 59 - 330
Target Start/End: Original strand, 48565979 - 48566251
Alignment:
| Q |
59 |
atgataaataatataaagaagtacgtatacattttagttcataaaa-atatattagatgcatacaatgattcatttttctaattggagttaaattctaat |
157 |
Q |
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| T |
48565979 |
atgataaataatataaagaagtacgtatacattttagttcataaaaaatatattagatgaatacaatgattaatttttctaattggatttaaattctaat |
48566078 |
T |
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| Q |
158 |
tgtaattatctacaattttctatccgaaactacttgatgtgaactgtgaaaacaaaatttgcggttccataaaaaacaaactagatttataaagttagac |
257 |
Q |
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| T |
48566079 |
tgtaattatctacaacattctatccgaaactacttgatgtgaactgtgaaaacaaaatttgcggttacataaaaaacaaactagatttataaagttagac |
48566178 |
T |
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| Q |
258 |
cgagttgtaatgaagttgaattgaaatgtcacattgcttagatttttaagttgttggatgtattaatatattt |
330 |
Q |
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| T |
48566179 |
cgagttgtactgaagttgaattgaaatgtcacattgcttagatttttaagttgttggatgtattaatatattt |
48566251 |
T |
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