View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_56 (Length: 322)
Name: NF1854_low_56
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_56 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 53037949 - 53037636
Alignment:
| Q |
9 |
catggatcacacaatgtcttgataaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatcatcatcataa |
108 |
Q |
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| T |
53037949 |
catggatcacacaatgtcttgataaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatcatcatcataa |
53037850 |
T |
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| Q |
109 |
ctaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaatgtca |
208 |
Q |
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| T |
53037849 |
ctaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaatgtca |
53037750 |
T |
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| Q |
209 |
accaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcctcttg |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037749 |
accaactaaccactcctaaatttggattcccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcctcttg |
53037650 |
T |
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| Q |
309 |
cttcttaaaatact |
322 |
Q |
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|||||||||||||| |
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| T |
53037649 |
cttcttaaaatact |
53037636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 39995636 - 39995956
Alignment:
| Q |
2 |
atccatgcatggatcacacaatgtcttgataaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatcatc |
101 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||| || |||||||||| | |||||| | ||||||| |||||||||||| |||||||| |
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| T |
39995636 |
atccatccatggatcacacaatgtcttgataaaaatgcttcttaaagacatccatatggatctcttgtagacaaataataaccaacaaagaaccatcatc |
39995735 |
T |
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| Q |
102 |
atcataactaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaatt |
198 |
Q |
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| T |
39995736 |
attgggactaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctcctttccccacccaaaatcaagtccataaatt |
39995835 |
T |
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| Q |
199 |
ggcaatgtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtca |
298 |
Q |
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||||||| |||||||||| |||||||||||| ||||| | |||||| ||||| || ||| || |||| | | | ||||||||||| |||||||||| |
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| T |
39995836 |
ggcaatgacaaccaactagtcactcctaaattaggattccaataaaaaggccccttctcaccattcccta---caacttgaagatcttggaacttagtca |
39995932 |
T |
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| Q |
299 |
aatcctcttgcttcttaaaatact |
322 |
Q |
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|||| |||||||||||||| |||| |
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| T |
39995933 |
aatcttcttgcttcttaaagtact |
39995956 |
T |
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