View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1854_low_6 (Length: 619)

Name: NF1854_low_6
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1854_low_6
NF1854_low_6
[»] chr5 (5 HSPs)
chr5 (9-495)||(27976206-27976692)
chr5 (535-602)||(27976105-27976172)
chr5 (281-321)||(29587683-29587723)
chr5 (282-316)||(34166131-34166165)
chr5 (378-410)||(41451289-41451321)
[»] chr8 (9 HSPs)
chr8 (282-316)||(30585118-30585152)
chr8 (281-317)||(3943757-3943793)
chr8 (285-321)||(18374281-18374317)
chr8 (379-431)||(30035517-30035569)
chr8 (379-429)||(30051662-30051712)
chr8 (282-315)||(16852084-16852117)
chr8 (283-331)||(9581867-9581915)
chr8 (284-316)||(10440381-10440413)
chr8 (281-317)||(16330988-16331024)
[»] chr6 (7 HSPs)
chr6 (281-314)||(34406440-34406473)
chr6 (282-318)||(1960346-1960382)
chr6 (281-311)||(32862773-32862803)
chr6 (281-318)||(2468489-2468526)
chr6 (282-323)||(4240931-4240972)
chr6 (282-319)||(8427749-8427786)
chr6 (281-318)||(34443060-34443097)
[»] chr4 (9 HSPs)
chr4 (282-323)||(21886518-21886559)
chr4 (281-317)||(32754619-32754655)
chr4 (281-323)||(1678675-1678717)
chr4 (382-431)||(5912661-5912710)
chr4 (284-317)||(19176660-19176693)
chr4 (286-315)||(23817990-23818019)
chr4 (281-318)||(27131689-27131726)
chr4 (282-315)||(51238017-51238050)
chr4 (281-337)||(9018886-9018942)
[»] chr3 (3 HSPs)
chr3 (281-317)||(28286906-28286942)
chr3 (281-316)||(17105270-17105305)
chr3 (282-318)||(18398014-18398050)
[»] chr7 (3 HSPs)
chr7 (286-321)||(43434517-43434552)
chr7 (281-317)||(2811268-2811304)
chr7 (281-317)||(6632427-6632463)
[»] chr1 (3 HSPs)
chr1 (286-321)||(40494269-40494304)
chr1 (284-323)||(2642911-2642951)
chr1 (286-314)||(27723845-27723873)
[»] chr2 (4 HSPs)
chr2 (382-431)||(34553955-34554004)
chr2 (293-337)||(13251634-13251678)
chr2 (282-318)||(15804120-15804156)
chr2 (282-318)||(22556244-22556280)


Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 495
Target Start/End: Complemental strand, 27976692 - 27976206
Alignment:
Q  9 gagatgaagtatcagtatcctgcatgttggatccttgacctgattttctaaaaagtgcttcatgtggtgtatatttgtattctgtggttgttgtgtatgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27976692 gagatgaagtatcagtatcctgcatgttggatccttgacctgattttctaaaaagtgcttcatgtggtgtatatttgtattctgtggttgttgtgtatgg 27976593  T
Q  109 actttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtcccttgtcacaagagcattcttcatttctcttaactac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27976592 actttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtcccttgtcacaagagcattcttcatttctcttaactgc 27976493  T
Q  209 acgaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactggtgttcgatatgttacattcaatcactttcattttctta 308  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  27976492 acaaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactggtgtccgatatgttacgttcaatcactttcattttctta 27976393  T
Q  309 aattattaccggtattcacatgtcggtgtttgtcaaggattaggaacacatccacaaacactgaaaacgacatttttcttttgtcatttgataaatgact 408  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27976392 aattattaccggtattcacatgtcggtgtttgtcaaggattatgaacacatccacaaacactgaaaacgacatttttcttttgtcatttgataaatgact 27976293  T
Q  409 tgaattttgaactattttgaggtgctatacttagaaacttgagttccattctgctaataataaaatcttacaaattattacaggaat 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27976292 tgaattttgaactattttgaggtgctatacttagaaacttgagttccattctgctaataataaaatcttacaaattattacaggaat 27976206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 535 - 602
Target Start/End: Complemental strand, 27976172 - 27976105
Alignment:
Q  535 cttattatactatgtgcagatattcaaacaagttgtcagttgtcacacgtagcaattctaccaatttc 602  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27976172 cttattatcctatgtgcagatattcaaacaagttgtcagttgtcacacatagcaattctaccaatttc 27976105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 29587723 - 29587683
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattaccggt 321  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  29587723 gttacatttaatcacttccattttcttaaattattaccggt 29587683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 34166165 - 34166131
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattatta 316  Q
    ||||||||||||| |||||||||||||||||||||    
T  34166165 ttacattcaatcaatttcattttcttaaattatta 34166131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 41451321 - 41451289
Alignment:
Q  378 acatttttcttttgtcatttgataaatgacttg 410  Q
    |||||||||||||||||||||||| ||||||||    
T  41451321 acatttttcttttgtcatttgatatatgacttg 41451289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 30585118 - 30585152
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattatta 316  Q
    |||||||||||||||||||||||||||||||||||    
T  30585118 ttacattcaatcactttcattttcttaaattatta 30585152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 3943793 - 3943757
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattac 317  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3943793 gttacattcaatcacttttattttcttaaattattac 3943757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 18374281 - 18374317
Alignment:
Q  285 cattcaatcactttcattttcttaaattattaccggt 321  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18374281 cattcaatcacattcattttcttaaattattaccggt 18374317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 30035517 - 30035569
Alignment:
Q  379 catttttcttttgtcatttgataaatgacttgaattttgaactattttgaggt 431  Q
    ||||||||||||||||||||||| ||||||||||| || || |||||| ||||    
T  30035517 catttttcttttgtcatttgatatatgacttgaatctttaattattttaaggt 30035569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 30051662 - 30051712
Alignment:
Q  379 catttttcttttgtcatttgataaatgacttgaattttgaactattttgag 429  Q
    |||||||||||| |||||||||| || |||||||| ||||| |||||||||    
T  30051662 catttttcttttatcatttgatatataacttgaatcttgaattattttgag 30051712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 16852117 - 16852084
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattatt 315  Q
    |||||||||||||||| |||||||||||||||||    
T  16852117 ttacattcaatcacttacattttcttaaattatt 16852084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 9581915 - 9581867
Alignment:
Q  283 tacattcaatcactttcattttcttaaattattaccggtattcacatgt 331  Q
    |||||| ||||||||||||||||||||| |||||| | |||| ||||||    
T  9581915 tacatttaatcactttcattttcttaaactattactgatattaacatgt 9581867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 10440413 - 10440381
Alignment:
Q  284 acattcaatcactttcattttcttaaattatta 316  Q
    ||||||||||||||| |||||||||||||||||    
T  10440413 acattcaatcacttttattttcttaaattatta 10440381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 16331024 - 16330988
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattac 317  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  16331024 gttacatttaatcattttcattttcttaaattattac 16330988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 34406473 - 34406440
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattat 314  Q
    ||||||||||||||||||||||||||||||||||    
T  34406473 gttacattcaatcactttcattttcttaaattat 34406440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 1960346 - 1960382
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattattacc 318  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1960346 ttacattcaatcactttcattttcttaaattactacc 1960382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 311
Target Start/End: Original strand, 32862773 - 32862803
Alignment:
Q  281 gttacattcaatcactttcattttcttaaat 311  Q
    |||||||||||||||||||||||||||||||    
T  32862773 gttacattcaatcactttcattttcttaaat 32862803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 2468489 - 2468526
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattacc 318  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  2468489 gttacattcaattacttccattttcttaaattattacc 2468526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 4240931 - 4240972
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattattaccggtat 323  Q
    |||||||  |||||||||||||||||||||||||| ||||||    
T  4240931 ttacatttcatcactttcattttcttaaattattaacggtat 4240972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 8427786 - 8427749
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattattaccg 319  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  8427786 ttacatttaatcaatttcattttcttaaattattaccg 8427749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 34443060 - 34443097
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattacc 318  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  34443060 gttacattcaatcactttcactttctcaaattattacc 34443097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 21886559 - 21886518
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattattaccggtat 323  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  21886559 ttacattcaatcactatcattttctcaaattattaccggtat 21886518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 32754655 - 32754619
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattac 317  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32754655 gttacattcaatcactttcattttcttaaactattac 32754619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 1678717 - 1678675
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattaccggtat 323  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||    
T  1678717 gttacatttaatcactttcattttctcaaattattagcggtat 1678675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 5912661 - 5912710
Alignment:
Q  382 ttttcttttgtcatttgataaatgacttgaattttgaactattttgaggt 431  Q
    |||||||||||||||||||| || | |||||| ||||| |||||||||||    
T  5912661 ttttcttttgtcatttgatatataatttgaatcttgaattattttgaggt 5912710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 19176693 - 19176660
Alignment:
Q  284 acattcaatcactttcattttcttaaattattac 317  Q
    ||||||||||||||||||||||||||| ||||||    
T  19176693 acattcaatcactttcattttcttaaactattac 19176660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 23817990 - 23818019
Alignment:
Q  286 attcaatcactttcattttcttaaattatt 315  Q
    ||||||||||||||||||||||||||||||    
T  23817990 attcaatcactttcattttcttaaattatt 23818019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 27131689 - 27131726
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattacc 318  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  27131689 gttacattcaattacttccattttcttaaattattacc 27131726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 51238017 - 51238050
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattatt 315  Q
    |||||||||||||||| |||||||||||||||||    
T  51238017 ttacattcaatcacttccattttcttaaattatt 51238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 9018886 - 9018942
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattaccggtattcacatgtcggtgt 337  Q
    |||||||||||| ||||||||||||| |||||| ||| ||| |  ||||||||||||    
T  9018886 gttacattcaattactttcattttctcaaattactactggtgtctacatgtcggtgt 9018942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 28286942 - 28286906
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattac 317  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28286942 gttacattcaattactttcattttcttaaattattac 28286906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 17105305 - 17105270
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattatta 316  Q
    |||||||||||||||||| |||||||||||||||||    
T  17105305 gttacattcaatcacttttattttcttaaattatta 17105270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 18398014 - 18398050
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattattacc 318  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  18398014 ttacattcaatcacattcattttcataaattattacc 18398050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 43434552 - 43434517
Alignment:
Q  286 attcaatcactttcattttcttaaattattaccggt 321  Q
    ||||||||||||||||||||||||||||||| ||||    
T  43434552 attcaatcactttcattttcttaaattattatcggt 43434517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 2811304 - 2811268
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattac 317  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  2811304 gttacattcaattacttttattttcttaaattattac 2811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 6632463 - 6632427
Alignment:
Q  281 gttacattcaatcactttcattttcttaaattattac 317  Q
    |||||||||||||||||| |||||||||| |||||||    
T  6632463 gttacattcaatcacttttattttcttaatttattac 6632427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 40494269 - 40494304
Alignment:
Q  286 attcaatcactttcattttcttaaattattaccggt 321  Q
    |||||||||||||||||| |||||||||||||||||    
T  40494269 attcaatcactttcatttgcttaaattattaccggt 40494304  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 2642911 - 2642951
Alignment:
Q  284 acattcaatcactttcattttc-ttaaattattaccggtat 323  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  2642911 acattcaatcactttcattttctttaaattattactggtat 2642951  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 27723873 - 27723845
Alignment:
Q  286 attcaatcactttcattttcttaaattat 314  Q
    |||||||||||||||||||||||||||||    
T  27723873 attcaatcactttcattttcttaaattat 27723845  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 34553955 - 34554004
Alignment:
Q  382 ttttcttttgtcatttgataaatgacttgaattttgaactattttgaggt 431  Q
    |||||||||| ||||||||  |||||| |||||||||| |||||||||||    
T  34553955 ttttcttttgccatttgatttatgactagaattttgaattattttgaggt 34554004  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 13251634 - 13251678
Alignment:
Q  293 cactttcattttcttaaattattaccggtattcacatgtcggtgt 337  Q
    ||||||||||||||||||||| ||||||||| || ||||| ||||    
T  13251634 cactttcattttcttaaattactaccggtatccatatgtcagtgt 13251678  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 15804120 - 15804156
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattattacc 318  Q
    |||||||||||||||| |||||||| |||||||||||    
T  15804120 ttacattcaatcacttccattttctcaaattattacc 15804156  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 22556280 - 22556244
Alignment:
Q  282 ttacattcaatcactttcattttcttaaattattacc 318  Q
    ||||||||||||||||  |||||||||||||||||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacc 22556244  T

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