View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_60 (Length: 302)
Name: NF1854_low_60
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_60 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 43435663 - 43435386
Alignment:
| Q |
11 |
atgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
43435663 |
atgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaa |
43435564 |
T |
|
| Q |
111 |
ttcatgaccgacactcttcatctcctcaagaatactccaaaactcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgta |
210 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
43435563 |
ttcatgaccgacactcttcatctcctcaataatactccaaaactcctcaattgattccatccttggaagaactctagcaactgcattataagtcactgta |
43435464 |
T |
|
| Q |
211 |
ttccgttgataactagattgcttcccaacccaatgaaaaaacttataagcctttaaaggaccatctcgaagctctttc |
288 |
Q |
| |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
43435463 |
ttctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactatctcgaagctctttc |
43435386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 43443857 - 43443580
Alignment:
| Q |
11 |
atgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
43443857 |
atgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaa |
43443758 |
T |
|
| Q |
111 |
ttcatgaccgacactcttcatctcctcaagaatactccaaaactcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgta |
210 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
43443757 |
ttcatgaccgacactcttcatctcctcaataatactccaaaactcctcaattgattccatccttggaagaactctagcaactgcattataagtcactgta |
43443658 |
T |
|
| Q |
211 |
ttccgttgataactagattgcttcccaacccaatgaaaaaacttataagcctttaaaggaccatctcgaagctctttc |
288 |
Q |
| |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
43443657 |
ttctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactatctcgaagctctttc |
43443580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 43427158 - 43426881
Alignment:
| Q |
11 |
atgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaa |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43427158 |
atgaactatccatcatatgctcgtaaagcttgacactgtcctccatcatcctattatttagaagctgcctcgatatcttaatgtaagtatcaagatccaa |
43427059 |
T |
|
| Q |
111 |
ttcatgaccgacactcttcatctcctcaagaatactccaaaactcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
43427058 |
ttcatgaccgacactcttcatctcctcaagaatactccaaaacttctcaattgactccattctaggaagaactctagcaactgcattataagtcactgta |
43426959 |
T |
|
| Q |
211 |
ttccgttgataactagattgcttcccaacccaatgaaaaaacttataagcctttaaaggaccatctcgaagctctttc |
288 |
Q |
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||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
43426958 |
ttctgtagataaccagattgctttccaacccaatgaaaaaacttataagcctttaaaggactatttcgaagctctttc |
43426881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 43422580 - 43422303
Alignment:
| Q |
11 |
atgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaa |
110 |
Q |
| |
|
|||||| |||||||||| |||| |||||||| |||||||||| |||||||| ||||||| || |||| | | |||||| || |||||||||| ||||| |
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| T |
43422580 |
atgaaccatccatcataagctcgtaaagcttaacagcatccttcatcatctgattctttacaaactgcattgttatcttcatataagtatcaatctccaa |
43422481 |
T |
|
| Q |
111 |
ttcatgaccgacactcttcatctcctcaagaatactccaaaactcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgta |
210 |
Q |
| |
|
||||| | ||||||||||||||| ||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||| ||||| || | | |
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| T |
43422480 |
ttcataattcacactcttcatctccgcaagaatactccaaaactcctcaattgaatccatcctagcaagaactctagcaactgcattgtaagtcacagca |
43422381 |
T |
|
| Q |
211 |
ttccgttgataactagattgcttcccaacccaatgaaaaaacttataagcctttaaaggaccatctcgaagctctttc |
288 |
Q |
| |
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|| ||||||||| |||||||||||||||||||| |||||| || ||| |||||||||||| | ||||||||||||| |
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| T |
43422380 |
ttatgttgataaccagattgcttcccaacccaataaaaaaagttgtaaccctttaaaggacaacttcgaagctctttc |
43422303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 21126 - 20866
Alignment:
| Q |
11 |
atgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
21126 |
atgaactatccatcatatgctcataaagcttgacaacatcctccatcatcttattcttttgaagctgcctcgatatcct-----------------ccaa |
21044 |
T |
|
| Q |
111 |
ttcatgaccgacactcttcatctcctcaagaatactccaaaactcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgta |
210 |
Q |
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|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21043 |
ttcatgacagacactcttcgtctcctcaagaatactccaaaactcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgta |
20944 |
T |
|
| Q |
211 |
ttccgttgataactagattgcttcccaacccaatgaaaaaacttataagcctttaaaggaccatctcgaagctctttc |
288 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20943 |
ttccgttgataactagatttctttccaacccaatgaaaaaacttataagcctttaaaggactatctcgaagctctttc |
20866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 52 - 271
Target Start/End: Original strand, 40186180 - 40186396
Alignment:
| Q |
52 |
tccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctcctcaagaatactccaaa |
151 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40186180 |
tccatcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgaccgacactcttcatctcctc---gatactccaaa |
40186276 |
T |
|
| Q |
152 |
actcttcaattgactccactctaggaagaactctagcaactgcattataagtaactgtattccgttgataactagattgcttcccaacccaatgaaaaaa |
251 |
Q |
| |
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|||| |||||||| |||| ||| ||||||||| ||||| ||| ||||| || ||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
40186277 |
actcctcaattgagtccatcttagcaagaactcttgcaacataattgtaagtcacggtattatgttgataaccagattgcttcccaacccaatgaaaaaa |
40186376 |
T |
|
| Q |
252 |
cttataagcctttaaaggac |
271 |
Q |
| |
|
||| |||||||||||||||| |
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| T |
40186377 |
cttgtaagcctttaaaggac |
40186396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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