View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_65 (Length: 285)
Name: NF1854_low_65
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 31347151 - 31346881
Alignment:
| Q |
16 |
gttcgtgcattacactgttgttgtttgtgcattatattgtccacgata--cacctgacaaataaaaaagttgtcccacaatttaaagggcaggtcaaaaa |
113 |
Q |
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| T |
31347151 |
gttcgtgcattacactgttgttgtttgtgcattatattgtccacgatatacacctgacaaataaaaaagttgtcccacaatttaaagggcagatcaaaaa |
31347052 |
T |
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| Q |
114 |
atctcagggctcaataaatgttgtccaaggccttgcttgctctcttaaaacaaacttttgtatcttaattacatgttgaagtttatggcatttctaggaa |
213 |
Q |
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| T |
31347051 |
atctcagggctcaataaatgttgtccaaggccttgcttgctctcttaaaacaaacttttgtatcttaattacatgttgaagtttatggcatttctaggaa |
31346952 |
T |
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| Q |
214 |
aaatgattgttttaggagtcactcaatgagccaaacgtttagtaaccactctttgaacttcaaatatgcac |
284 |
Q |
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| T |
31346951 |
aaatgattgttttaggagtcacttaatgagccaaacgtttagtaaccactctttgaacttcaaatatgcac |
31346881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 31379826 - 31379684
Alignment:
| Q |
109 |
aaaaaatctcagggctcaataaatgttgtccaaggccttgcttgctctcttaaaacaaacttttgtatcttaattacatgttgaagtttatggcatttct |
208 |
Q |
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| T |
31379826 |
aaaaaatcttagggcctaagaaatgatatccaagactttgttttctctcttaaaacaaacttttgtatcttaattacatgttgaagtttatggcatgtc- |
31379728 |
T |
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| Q |
209 |
aggaaaaatgattgttttaggagtcactcaatgagccaaacgtt |
252 |
Q |
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| T |
31379727 |
aagaaaaatgattgttttaggagtcacttaatgagccaaacgtt |
31379684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 31399437 - 31399300
Alignment:
| Q |
109 |
aaaaaatctcagggctcaataaatgttgtccaaggccttg-cttgctctcttaaaacaaacttttgtatcttaattacatgttgaagtttatggcatttc |
207 |
Q |
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||||||||||||||||||| || ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
31399437 |
aaaaaatctcagggctcaagaa-tgttgtcaaaggccttggctttctctcttaaaacaaacttttgtatcttaattaaatgttgaagtttatggcaatta |
31399339 |
T |
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| Q |
208 |
taggaaaaatgattgttttaggagtcactcaatgagccaa |
247 |
Q |
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| T |
31399338 |
ta-gaaaattgattgttttagaagtcacttaatgagccaa |
31399300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 31379931 - 31379862
Alignment:
| Q |
31 |
tgttgttgtttgtgcattatattgtccacgatacacctgacaaataaaaaagttgtcccacaatttaaag |
100 |
Q |
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| T |
31379931 |
tgttgttgtttgtgcattatattgtccacaatacacctaacaaataaaaaagttatccaacaatttaaag |
31379862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 31399706 - 31399657
Alignment:
| Q |
20 |
gtgcattacactgttgt---tgtttgtgcattatattgtccacgatacac |
66 |
Q |
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| T |
31399706 |
gtgcattacactgttgttgttgtttgtgcattatattgtccacgatacac |
31399657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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