View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_low_7 (Length: 618)
Name: NF1854_low_7
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Complemental strand, 52164126 - 52163524
Alignment:
| Q |
8 |
gattatactgcaaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccggga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52164126 |
gattatactgcaaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccggga |
52164027 |
T |
|
| Q |
108 |
atattgctccggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52164026 |
atattgctccggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgtt |
52163927 |
T |
|
| Q |
208 |
gcattggagtgggaaaggtaaaccttgggttagattggatgctagtaggccttgtcctttggatgcactttgggcaccctatgatctgttacaaactcca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52163926 |
gcattggagtgggaaaggtaaaccttgggttagattggatgctagtaggccttgtcctttggatgcactttgggcaccctatgatctgttacaaactcca |
52163827 |
T |
|
| Q |
308 |
ttttcttttgattcttgacaaatcttcaattcactacctgtgatgaaaggcgtgtttgacagtaacacatgtgtaatacattcaattattaccggtgtcg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52163826 |
ttttcttttgattcttgacaaatcttcaattcactacctgtgatgaaaggcgtgtttgaaagtaacacatgtgtaatacattcaattattaccggtgtcg |
52163727 |
T |
|
| Q |
408 |
atatctgatattcatgttaatgactcatggcttgtgaatcggattcatccatttatatacatttttatattt------acatatacatgtagttatatac |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
52163726 |
atatctgatattcatgttaatgactcatggcttgtgaatcggattcatccatttatacacatttttatatttacatttacatatacatgtagttatatac |
52163627 |
T |
|
| Q |
502 |
aatttgagcactcctttggcgctttcctattggttaagagaaggttgatcttctttttgggtaaataatattcacaccaagttgaatcattgggggaaga |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52163626 |
aatttgagcactcctttggcgctttcctattggttaagagaaggttgatcttctttttgggtaaataatattcacaccaagttgaatcattgggggaaga |
52163527 |
T |
|
| Q |
602 |
agt |
604 |
Q |
| |
|
||| |
|
|
| T |
52163526 |
agt |
52163524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 42171847 - 42171903
Alignment:
| Q |
185 |
catcccggtcctgtgagtttgttgcattggagtgggaaaggtaaaccttgggttaga |
241 |
Q |
| |
|
||||| ||||| |||||| | |||||||||||||||||||| || |||||| ||||| |
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|
| T |
42171847 |
catcctggtccggtgagtcttttgcattggagtgggaaagggaagccttggcttaga |
42171903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 6635221 - 6634914
Alignment:
| Q |
18 |
caaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctcc |
117 |
Q |
| |
|
||||||||||||| |||||||| || || ||||||||||| ||||||||| | ||||| ||||| || ||||||||||||||||| ||| | |||| ||| |
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|
| T |
6635221 |
caaagattgaggaatggatggaattacaaaagaggatgagaatctatgaacttggttcattgccaccttttttgcttgtttttgcaggggaaattgttcc |
6635122 |
T |
|
| Q |
118 |
ggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagt |
217 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| |||||||||||| |
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|
| T |
6635121 |
agtggatcatagatggaatcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagt |
6635022 |
T |
|
| Q |
218 |
gggaaaggtaaaccttgggttagattggatgctagtaggccttgtcctttggatgcactttgggcaccctatgatctgttacaaactccattttcttttg |
317 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||| || || || ||||||||| ||| |
|
|
| T |
6635021 |
ggaaaaggtaaaccatgggtgagattggatgctaatagaccttgtcctttggatgctctttgggcaccttatgatcttttgcagacaccattttctcttg |
6634922 |
T |
|
| Q |
318 |
attcttga |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
6634921 |
attcttga |
6634914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 40207480 - 40207521
Alignment:
| Q |
119 |
gtggatcataggtggaatcaacatggacttggtggtgataat |
160 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
40207480 |
gtggatcataggtggaatcaacacggacttggaggtgataat |
40207521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 33346586 - 33346779
Alignment:
| Q |
32 |
tggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccggtggatcataggt |
131 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| | ||||||||||||| ||| | ||||||||||| ||| |
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|
| T |
33346586 |
tggatggagttgcagaagagaatgagaatctatgagcttggttcgttgccgccgtttttgttggtttttgccgggaggattacgccggtggatcaccggt |
33346685 |
T |
|
| Q |
132 |
ggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaagg |
225 |
Q |
| |
|
||||||| ||||| || || ||||||||||||||||| |||||| | || | ||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
33346686 |
ggaatcagcatgggctcggcggtgataattttcgtgggctttgtcgggatttgcatccaggcccggtgagtttgttgcattggagtggaaaagg |
33346779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 32 - 273
Target Start/End: Complemental strand, 7266511 - 7266270
Alignment:
| Q |
32 |
tggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccggtggatcataggt |
131 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| | ||||| |||||||||||| |||||||||| || || || || | |||||| |||||| ||| |
|
|
| T |
7266511 |
tggatggagcttcagaagagaatgaggatctatgagcttggttcattgccgccgtttctgcttgttttcgcaggtaaaatagttccggttgatcatcggt |
7266412 |
T |
|
| Q |
132 |
ggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaaggtaaacc |
231 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| | ||| |||||| | || | ||||| || || |||||||| | |||||||||||||| |||||||| |
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|
| T |
7266411 |
ggaatcaacatgggcttggcggtgataatttccatgggctttgtcgggatttgcatccgggcccggtgagtttacttcattggagtgggaagggtaaacc |
7266312 |
T |
|
| Q |
232 |
ttgggttagattggatgctagtaggccttgtcctttggatgc |
273 |
Q |
| |
|
|||| || | ||||||| | | |||||||| |||||||| |
|
|
| T |
7266311 |
gtgggccaggcttgatgctaatcgtccttgtccgttggatgc |
7266270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 15964453 - 15964232
Alignment:
| Q |
19 |
aaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccg |
118 |
Q |
| |
|
||||||||| | ||||||||||| || |||| || || |||||||| | ||||| ||||| || ||||| ||||||||||| || ||| ||| | |
|
|
| T |
15964453 |
aaagattgaaaactggatggagttacaaaagaagagaagaatctatgagctaggttcattgccaccttttttacttgtttttgcaggaaatgttgaagct |
15964354 |
T |
|
| Q |
119 |
gtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtg |
218 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | | ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
15964353 |
attgatcatagatggaatcaacatggacttggtggtgataatttgaatggtgtttgtagatctttgcatcctggtcctgttagtttattgcattggagtg |
15964254 |
T |
|
| Q |
219 |
ggaaaggtaaaccttgggttag |
240 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
15964253 |
gaaaaggaaaaccttgggttag |
15964232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 2498608 - 2498502
Alignment:
| Q |
125 |
cataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaag |
224 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| || || | |||||||| | | ||||| ||||| || |||||||| ||||||||||| |||| |
|
|
| T |
2498608 |
catagatggaatcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaag |
2498509 |
T |
|
| Q |
225 |
gtaaacc |
231 |
Q |
| |
|
| ||||| |
|
|
| T |
2498508 |
ggaaacc |
2498502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 27101196 - 27101090
Alignment:
| Q |
125 |
cataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaag |
224 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| || || | |||||||| | | ||||| ||||| || |||||||| ||||||||||| |||| |
|
|
| T |
27101196 |
catagatggaatcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaag |
27101097 |
T |
|
| Q |
225 |
gtaaacc |
231 |
Q |
| |
|
| ||||| |
|
|
| T |
27101096 |
ggaaacc |
27101090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 37500870 - 37500754
Alignment:
| Q |
119 |
gtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| | || || || ||| || ||| ||||| | ||||||||| || ||||| |||||| | |||||||||| |
|
|
| T |
37500870 |
gtggatcataggtggaatcaacatggtttaggaggggacaatattgaaggtaaatgtaggagtcttcatcctgggcctgttagtttgcttcattggagtg |
37500771 |
T |
|
| Q |
219 |
ggaaaggtaaaccttgg |
235 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
37500770 |
ggaagggtaaaccttgg |
37500754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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