View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_78 (Length: 258)
Name: NF1854_low_78
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_78 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0522 (2 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 2665641 - 2665390
Alignment:
| Q |
10 |
ataatactaacagacatgttattcacgcaataaagaatacatcattaagaaaattaaacaaaaacgataaatatcatttatttattt----atttttgaa |
105 |
Q |
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| T |
2665641 |
ataatactaacagacatattattcacgcaataaagaatacatcattaagaaaattaaacaaaaacgataaatatcatttatttatttatttatttttgaa |
2665542 |
T |
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| Q |
106 |
ctcttacaataaccatcaattacatataatgtcactctttaattactactcatataattcaagannnnnnnnnngtttacattttcaagctttcaacacc |
205 |
Q |
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| T |
2665541 |
ctcttacaataaccatcaattacacataatgtcactctttaattactactcatataattcaaga-tttttttttgtttacattttcaagctttcaacacc |
2665443 |
T |
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| Q |
206 |
atattttcacattaaagtgaaaatcaagccctaaacactaaaaggcaacaaat |
258 |
Q |
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| T |
2665442 |
atattttcacattaaagtgaaaatcaagccctaaacactaaaaggcaacaaat |
2665390 |
T |
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Target: scaffold0522 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 420 - 468
Alignment:
| Q |
199 |
caacaccatattttcacattaaagtgaaaatcaagccctaaacactaaa |
247 |
Q |
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| T |
420 |
caacacgatattttcacatgaaagtgaaaatcaagacctaaacactaaa |
468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 280 - 361
Alignment:
| Q |
63 |
ttaaacaaaaacgataaatatcatttatttatttatttttgaactcttacaataaccatcaattacatataatgtcactctttaa |
147 |
Q |
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| T |
280 |
ttaagcaaaaacgataaatattatttatta---taatattaaactcttacaagaaccatgagttacacataatgtcactctttaa |
361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 21472287 - 21472239
Alignment:
| Q |
199 |
caacaccatattttcacattaaagtgaaaatcaagccctaaacactaaa |
247 |
Q |
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| T |
21472287 |
caacaccatattttcacacgaaagtgaaaatcaagacctaaacactaaa |
21472239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 19261895 - 19261975
Alignment:
| Q |
60 |
aaattaaacaaaaacgataaatatcatttatttatttatttttgaactcttacaataaccatcaattacatataatgtcactctt |
144 |
Q |
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| T |
19261895 |
aaattaaacaaaaacgacaaatatcatttatttaata----ttgaactcattcacgaaccatcaattacacataatgtcactctt |
19261975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 4604 - 4556
Alignment:
| Q |
199 |
caacaccatattttcacattaaagtgaaaatcaagccctaaacactaaa |
247 |
Q |
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| T |
4604 |
caacaccatattttcacacgaaagtgaatatcaagacctaaacactaaa |
4556 |
T |
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