View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1854_low_8 (Length: 593)

Name: NF1854_low_8
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1854_low_8
NF1854_low_8
[»] chr4 (10 HSPs)
chr4 (101-579)||(55907344-55907822)
chr4 (11-76)||(55907245-55907310)
chr4 (390-492)||(661854-661956)
chr4 (442-567)||(3437630-3437755)
chr4 (460-560)||(547943-548043)
chr4 (443-556)||(1755485-1755598)
chr4 (441-488)||(571330-571377)
chr4 (283-457)||(532773-532947)
chr4 (441-480)||(553767-553806)
chr4 (399-495)||(8186326-8186422)
[»] chr2 (5 HSPs)
chr2 (101-439)||(1036086-1036424)
chr2 (243-579)||(1036422-1036758)
chr2 (11-76)||(1035987-1036052)
chr2 (187-238)||(44575173-44575224)
chr2 (443-493)||(45244859-45244909)
[»] chr5 (2 HSPs)
chr5 (188-256)||(41900247-41900315)
chr5 (447-488)||(20477455-20477496)
[»] chr8 (7 HSPs)
chr8 (391-491)||(14004140-14004240)
chr8 (377-493)||(17642880-17642996)
chr8 (399-488)||(17635623-17635712)
chr8 (391-491)||(5766564-5766664)
chr8 (443-487)||(32151969-32152013)
chr8 (441-488)||(21236154-21236201)
chr8 (434-472)||(18314640-18314678)
[»] chr7 (4 HSPs)
chr7 (438-493)||(10615708-10615763)
chr7 (381-495)||(7977866-7977980)
chr7 (210-250)||(10168825-10168865)
chr7 (210-250)||(10176350-10176390)
[»] chr1 (3 HSPs)
chr1 (408-490)||(7555196-7555278)
chr1 (426-486)||(33161200-33161260)
chr1 (441-493)||(9581685-9581737)
[»] chr6 (9 HSPs)
chr6 (438-493)||(6417087-6417142)
chr6 (186-239)||(6403848-6403901)
chr6 (441-493)||(7132300-7132352)
chr6 (443-486)||(6395539-6395582)
chr6 (441-492)||(7135224-7135275)
chr6 (441-492)||(7138147-7138198)
chr6 (441-486)||(6423907-6423952)
chr6 (446-486)||(6427183-6427223)
chr6 (441-469)||(9412143-9412171)
[»] chr3 (2 HSPs)
chr3 (191-256)||(513428-513493)
chr3 (438-497)||(13469655-13469714)
[»] scaffold1155 (1 HSPs)
scaffold1155 (399-480)||(1853-1934)
[»] scaffold0345 (1 HSPs)
scaffold0345 (399-480)||(8282-8363)
[»] scaffold0105 (1 HSPs)
scaffold0105 (399-480)||(30616-30697)


Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 101 - 579
Target Start/End: Original strand, 55907344 - 55907822
Alignment:
Q  101 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  201 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 55907543  T
Q  301 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907544 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgct 55907643  T
Q  401 caatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55907644 caatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaacattgcttct 55907743  T
Q  501 ctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttgactttagtagtagtaatcctt 579  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55907744 ctacgtaacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttgacttcagtagtagtaatcctt 55907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 55907245 - 55907310
Alignment:
Q  11 cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 76  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55907245 cacagaaagtaaaagaagaagaacaacaacaatgaggttgagtaaactggttgctttcagaaacac 55907310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 390 - 492
Target Start/End: Complemental strand, 661956 - 661854
Alignment:
Q  390 atcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttcca 489  Q
    ||||| || |||||||||||||||||| | | ||| ||||||| ||| || ||||||||||||||| ||||||||||||| || ||||||||||||| ||    
T  661956 atcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttaca 661857  T
Q  490 aca 492  Q
    |||    
T  661856 aca 661854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 442 - 567
Target Start/End: Original strand, 3437630 - 3437755
Alignment:
Q  442 gagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccc 541  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||||| ||| || ||| ||| ||    | ||  ||||||| ||||||||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaactttgattttctccatgaccgctatctaattcttatctctgattgcttccc 3437729  T
Q  542 tttccttgaagaacttgactttagta 567  Q
    ||| ||||||| ||||||| ||||||    
T  3437730 tttacttgaagtacttgaccttagta 3437755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 560
Target Start/End: Complemental strand, 548043 - 547943
Alignment:
Q  460 ttacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttga 559  Q
    ||||||||||||  ||||||| |||||||||||||| ||||||   |||||| ||||| |||  ||| |||| |||||||||||||||||||||||||||    
T  548043 ttacaactttgaactctctcacttgttccaacattgattctctctgtaacaacgacctggtttgtatatctggttgcttccctttccttgaagaacttga 547944  T
Q  560 c 560  Q
    |    
T  547943 c 547943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 556
Target Start/End: Complemental strand, 1755598 - 1755485
Alignment:
Q  443 agctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccct 542  Q
    ||||||||| ||||| |||||||||||||| |||||||  ||||||||||| |||  ||| |||| ||||||| |  | || ||| |||| || ||||||    
T  1755598 agctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccct 1755499  T
Q  543 ttccttgaagaact 556  Q
    || |||||||||||    
T  1755498 ttgcttgaagaact 1755485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 571377 - 571330
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctcatttgttcc 488  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  571377 cgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 457
Target Start/End: Complemental strand, 532947 - 532773
Alignment:
Q  283 tcctccctcgtctcttccaaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttcc 382  Q
    |||||||||| |||||||  || |||||| || | |||| |||||| ||||    ||||||||||||||||||    |||||||||||||||  ||||||    
T  532947 tcctccctcgcctcttccgtagattcaccaacctcacctcccttgaccttacaagctacaacggtgacctcaataggcttctctgccaaatatattttcc 532848  T
Q  383 attaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaa 457  Q
     || ||  |||| || ||||||||||| |||||||  | ||| ||||| | ||| |||||||| |||||| ||||    
T  532847 cttcaaactcacatcactcaatctctctaaccaacacaccattcccgcaaatgggttacgagccttctccaaaaa 532773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 553806 - 553767
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctca 480  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  553806 cgagctttctcccaaaacattacaactttgacctctctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 495
Target Start/End: Original strand, 8186326 - 8186422
Alignment:
Q  399 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattg 495  Q
    ||||||||||| ||| |||| | ||| || || | ||| || |||| | |||||| |||||||||||||||||| || ||||  |||||||||||||    
T  8186326 ctcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttccaacattg 8186422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 101 - 439
Target Start/End: Original strand, 1036086 - 1036424
Alignment:
Q  101 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  201 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttcc 1036285  T
Q  301 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgct 400  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1036286 aaaggttcaccaacattacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgct 1036385  T
Q  401 caatctctccaaccaacctatcatccccgctactggctt 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1036386 caatctctccaaccaacctatcatccccgctactggctt 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 243 - 579
Target Start/End: Original strand, 1036422 - 1036758
Alignment:
Q  243 cttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcacctacattacctaccttgatcttagttcctaca 342  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1036422 cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatcttagttcctaca 1036521  T
Q  343 acggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacg 442  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036522 acggtgacctcaacgcgcttctctaccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacg 1036621  T
Q  443 agctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccct 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||| |||    
T  1036622 agctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgattgctttcct 1036721  T
Q  543 ttccttgaagaacttgactttagtagtagtaatcctt 579  Q
    |||||||||||||||||||| | ||||||||||||||    
T  1036722 ttccttgaagaacttgacttcaatagtagtaatcctt 1036758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 1035987 - 1036052
Alignment:
Q  11 cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 76  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1035987 cacagaaagtaaaagaagaagaagaacaacaatgaggttgaataaactggttgctttcagaaacac 1036052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
Q  187 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa 238  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 45244859 - 45244909
Alignment:
Q  443 agctttctcccaaaatattacaactttgacttctctcatttgttccaacat 493  Q
    |||||||||||||| ||||| || |||||| ||||||||||||| ||||||    
T  45244859 agctttctcccaaactattagaaatttgacctctctcatttgttacaacat 45244909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  188 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 256  Q
    |||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 20477455 - 20477496
Alignment:
Q  447 ttctcccaaaatattacaactttgacttctctcatttgttcc 488  Q
    |||||||||||||||| ||||||||| ||||||| |||||||    
T  20477455 ttctcccaaaatattaaaactttgacctctctcagttgttcc 20477496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 14004240 - 14004140
Alignment:
Q  391 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 490  Q
    |||| ||||||||||| ||||||||||| ||| | || |||| ||| || ||||||||||| || || |||||||||||||| || || |||||||||||    
T  14004240 tcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 14004141  T
Q  491 c 491  Q
    |    
T  14004140 c 14004140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 377 - 493
Target Start/End: Original strand, 17642880 - 17642996
Alignment:
Q  377 ttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttct 476  Q
    ||||||||| ||  |||| || ||||||||||||||||| |  | ||| ||| | | ||| |||| |||||||||||| ||||||||||||||||| |||    
T  17642880 ttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctct 17642979  T
Q  477 ctcatttgttccaacat 493  Q
    |||| ||||||| ||||    
T  17642980 ctcacttgttcccacat 17642996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 488
Target Start/End: Original strand, 17635623 - 17635712
Alignment:
Q  399 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttcc 488  Q
    |||||||| ||||||||||  | ||| ||  ||| ||| ||||||||||||||||  ||||||||||||||||| ||||||| |||||||    
T  17635623 ctcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 491
Target Start/End: Original strand, 5766564 - 5766664
Alignment:
Q  391 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 490  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| || || |||||||||||||| || || |||||||||||    
T  5766564 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 5766663  T
Q  491 c 491  Q
    |    
T  5766664 c 5766664  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  443 agctttctcccaaaatattacaactttgacttctctcatttgttc 487  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 21236201 - 21236154
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctcatttgttcc 488  Q
    ||||| ||||||||||||| |||||||||||| ||||||| |||||||    
T  21236201 cgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 472
Target Start/End: Original strand, 18314640 - 18314678
Alignment:
Q  434 tggcttacgagctttctcccaaaatattacaactttgac 472  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  18314640 tggcttacgagttttctctcaaaatattacaactttgac 18314678  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 10615763 - 10615708
Alignment:
Q  438 ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 493  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||    
T  10615763 ttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacat 10615708  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 495
Target Start/End: Complemental strand, 7977980 - 7977866
Alignment:
Q  381 ccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 480  Q
    ||||| || ||||| || ||||||||||||||||| |||| ||| || |||  ||| || | || |||||||||||||||| |||||||||| || ||||    
T  7977980 ccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaaatattgcaactttgacctcactca 7977881  T
Q  481 tttgttccaacattg 495  Q
      ||||| |||||||    
T  7977880 aatgttctaacattg 7977866  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
Q  210 gtctccaaacagtttctctcagtcaccaacactcttcgatt 250  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10168825 gtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
Q  210 gtctccaaacagtttctctcagtcaccaacactcttcgatt 250  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10176350 gtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 490
Target Start/End: Complemental strand, 7555278 - 7555196
Alignment:
Q  408 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 490  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| || || |||| |||||||||    
T  7555278 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 486
Target Start/End: Complemental strand, 33161260 - 33161200
Alignment:
Q  426 cccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgtt 486  Q
    ||||||| |||||| ||| ||||||||||||  |||| ||||||||||||||||| |||||    
T  33161260 cccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgtt 33161200  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 493
Target Start/End: Complemental strand, 9581737 - 9581685
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 493  Q
    ||||||||||||  ||| |||||||| ||||| |||||||||||||| |||||    
T  9581737 cgagctttctccgtaaagattacaacgttgacatctctcatttgttcgaacat 9581685  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 6417142 - 6417087
Alignment:
Q  438 ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 493  Q
    |||||||||||||||||||| | |||||||||||| ||||||| ||||||| ||||    
T  6417142 ttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacat 6417087  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
Q  186 cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac 239  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac 6403848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 493
Target Start/End: Complemental strand, 7132352 - 7132300
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 493  Q
    ||||||||||||||||| |||||||||||| | ||||||  ||||||||||||    
T  7132352 cgagctttctcccaaaacattacaactttggcatctctcgattgttccaacat 7132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 6395582 - 6395539
Alignment:
Q  443 agctttctcccaaaatattacaactttgacttctctcatttgtt 486  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||    
T  6395582 agctctctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 7135275 - 7135224
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaaca 492  Q
    ||||||||||||||||| |||||||||||| | ||||||  |||||||||||    
T  7135275 cgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca 7135224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 7138198 - 7138147
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaaca 492  Q
    ||||||||||||||||| |||||||||||| | ||||||  |||||||||||    
T  7138198 cgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca 7138147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 6423952 - 6423907
Alignment:
Q  441 cgagctttctcccaaaatattacaactttgacttctctcatttgtt 486  Q
    ||||||||||||||||| || ||||||||||| ||||||| |||||    
T  6423952 cgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 486
Target Start/End: Complemental strand, 6427223 - 6427183
Alignment:
Q  446 tttctcccaaaatattacaactttgacttctctcatttgtt 486  Q
    ||||||||||||||||||||||||||| | ||||| |||||    
T  6427223 tttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 9412171 - 9412143
Alignment:
Q  441 cgagctttctcccaaaatattacaacttt 469  Q
    |||||||||||||||||||||||||||||    
T  9412171 cgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  191 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 256  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||||||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 497
Target Start/End: Original strand, 13469655 - 13469714
Alignment:
Q  438 ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgct 497  Q
    |||||||||||||||||||| | ||||||  |||| ||||||| ||||||| ||||||||    
T  13469655 ttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcccacattgct 13469714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 1853 - 1934
Alignment:
Q  399 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 480  Q
    |||||||||||| ||||||| || || |||||   ||| || |||| ||| |||||||||||||||||||||| | ||||||    
T  1853 ctcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttgaatactctca 1934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 8363 - 8282
Alignment:
Q  399 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 480  Q
    |||||||||||| ||||||| || || |||||   ||| || |||| ||| |||||||||||||||||||||| | ||||||    
T  8363 ctcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttgaatactctca 8282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 30616 - 30697
Alignment:
Q  399 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 480  Q
    |||||||||||| ||||||| || || |||||   ||| || |||| ||| |||||||||||||||||||||| | ||||||    
T  30616 ctcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttgaatactctca 30697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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