View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_81 (Length: 250)
Name: NF1854_low_81
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_81 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4427 - 4656
Alignment:
| Q |
1 |
ggttttcttgaaaatggaatgtctttgccatactctccttcagtgtcactaccttctcctgtggtggattcgaaatttaccgtgaataaacagtatccag |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4427 |
ggttttcttgaaaatggaatgtctttgccataccctccttcagtgtcaccaccttctcctgtggtggattcgaaatttaccgagaataaacagtatccag |
4526 |
T |
|
| Q |
101 |
ttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgttcccgttcacaatctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4527 |
ttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgttcccgttcacaatctca |
4626 |
T |
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| Q |
201 |
tgattggactgagtgtccatatgtgcatcc |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
4627 |
tgattggactgagtgtccatatgtgcatcc |
4656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 19408861 - 19409090
Alignment:
| Q |
1 |
ggttttcttgaaaatggaatgtctttgccatactctccttcagtgtcactaccttctcctgtggtggattcgaaatttaccgtgaataaacagtatccag |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19408861 |
ggttttcttgaaaatggaatgtctttgccataccctccttcagtgtcaccaccttctcctgtggtggattcgaaatttaccgagaataaacagtatccag |
19408960 |
T |
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| Q |
101 |
ttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgttcccgttcacaatctca |
200 |
Q |
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| T |
19408961 |
ttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgttcccgttcacaatctca |
19409060 |
T |
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| Q |
201 |
tgattggactgagtgtccatatgtgcatcc |
230 |
Q |
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| T |
19409061 |
tgattggactgagtgtccatatgtgcatcc |
19409090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 9314931 - 9314791
Alignment:
| Q |
92 |
agtatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgttcccgttc |
191 |
Q |
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||||||||||||| ||||| |||||| |||||||||||||||||||| | |||||||| || |||| ||| |||||||| | || |||||| ||| | |
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| T |
9314931 |
agtatccagttgacccatctcttcctgacataaaaaacagcatgtatgccacagatgaattccgcatgtattcattcaaggttcgtccttgttctcgtgc |
9314832 |
T |
|
| Q |
192 |
acaatctcatgattggactgagtgtccatatgtgcatcctg |
232 |
Q |
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| T |
9314831 |
atactctcatgattggactgagtgtccttttgtgcatcctg |
9314791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 11688547 - 11688458
Alignment:
| Q |
94 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgt |
183 |
Q |
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|||||| ||||||||||| |||||| ||||| ||||||||| ||||| | ||||||||||| |||| ||| |||||||||||| |||| |
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| T |
11688547 |
tatccaattgatccatcaattcctgatataagaaacagcatatatgccacagatgaatttcgcatgtattcggtcaaggtccttctttgt |
11688458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 36456162 - 36456241
Alignment:
| Q |
94 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggt |
173 |
Q |
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||||| ||||||||||| |||||| ||| ||||||||||| || ||| ||||||||||| |||| |||||||||||| |
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| T |
36456162 |
tatcctgttgatccatcccttcctgatatcaaaaacagcatatactcaactgatgaatttcgaatgtattctttcaaggt |
36456241 |
T |
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