View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_low_83 (Length: 250)
Name: NF1854_low_83
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_83 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 41512394 - 41512161
Alignment:
| Q |
17 |
attaaattgagatactacaaacaatgtcaacatacctctattgctcgttttcctcgacgctgagcttgggaactataaagctgtcgaagtataactcttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41512394 |
attaaattgagatactacaaacaatgtcaacatacctctattgctcgttttcctcgacgctgagcttgggaactataaagctgtcgaagtataactcttg |
41512295 |
T |
|
| Q |
117 |
ttttatacaaagggctgcagagaacagagcgaataaatacagatactgtgatcaaaactagtcatataacctgaacgaacaaagaattatcttacctacc |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41512294 |
tgttatacaaagggctgcagagaacagagcgaataaatacagatactgtgatcaaaactagtcatataacctgaacgaacaaagaattatcttacctacc |
41512195 |
T |
|
| Q |
217 |
actgtccttcaccttgccttccaacaccacctca |
250 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
41512194 |
actgtccttcaccttgccttcaaacaccacctca |
41512161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University