View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_89 (Length: 241)
Name: NF1854_low_89
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 39004032 - 39004246
Alignment:
| Q |
11 |
caatattagattggctgaatgaacgagacttaaattccttaaataagattttgactacaaggtttgttaacgnnnnnnntatagttggaaggagagactt |
110 |
Q |
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| T |
39004032 |
caatattagattggctgaatgaaccagacttgaattccttaaataaggttttgactacaaggtttgttaacgaaaaaaatatggttggaaggagagactt |
39004131 |
T |
|
| Q |
111 |
tgtggaaggtggccaaccaaattctccagaccattcataaaaacaaagatcttgtgcaacattaattctattatttcttatcacaaaatttatccttgaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39004132 |
cgtggaaggtggccaaccaaattctccagaccattcataaaaacaaagatcttgtgcaacattaattctattatttcttatcacaaaatttatccttgaa |
39004231 |
T |
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| Q |
211 |
tatccagttacatat |
225 |
Q |
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||||||||||||||| |
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| T |
39004232 |
tatccagttacatat |
39004246 |
T |
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