View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1854_low_9 (Length: 591)
Name: NF1854_low_9
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 326 - 573
Target Start/End: Original strand, 8878906 - 8879155
Alignment:
| Q |
326 |
gatcataacaactatcaattcttcacacatcctcaagacataattcaagtggttgagctaaacccctaaaagaatttgaaaatgaggccgtagttcaaat |
425 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8878906 |
gatcataacaactatcaattgttcacacatcctcaagacataattcaagtggttgagctaaacccctaaaagaatttgaaaatgaggccgtagttcaaat |
8879005 |
T |
|
| Q |
426 |
gatggttacaaaactaacattttataatttttaaatggtgacaattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatata |
525 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8879006 |
gatggttgcaaaactaacattttataaatttaaaatggtgacaattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatata |
8879105 |
T |
|
| Q |
526 |
aaat--tgagtcccaatcccaaacaaacaacaagtcatttgcacaatttg |
573 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8879106 |
aaattgtgagtcccaatcccaaacaaacaacaagtcatttgcacaatttg |
8879155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 8878575 - 8878874
Alignment:
| Q |
1 |
aaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagccactcttgctttga--atgctgaacctgaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8878575 |
aaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagccactcttgctttgaatatgctgaacctgaa |
8878674 |
T |
|
| Q |
99 |
ccaaaaatggtttacctgcttttttatatgcatagcttgttccttcacatgatacgcgtaacgcttttaatccctttttggactgttccactta------ |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
8878675 |
ccaaaaatggtttacctgcttttttatatgcatagcttgttccttcacatgct-------acgcttttaatccctttttggactgttccacttaccacgt |
8878767 |
T |
|
| Q |
193 |
-----aacatcaatgacaattgcatgcagtaatgtaaaccaaattttaagcctacaaatacattggaccaaccctaatttatnnnnnnnttatgtacctc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
8878768 |
tatggaacatcaatgacaattgcatgcagtaatgtaaaccaaattttaagcctacaaatacattggaccgaccctaatttataaaaaaattatgtacctc |
8878867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 385 - 518
Target Start/End: Original strand, 8882814 - 8882948
Alignment:
| Q |
385 |
aaacccctaaaagaatttgaaaatgagg-ccgtagttcaaatgatggttacaaaactaacattttataatttttaaatggtgacaattattttgtatata |
483 |
Q |
| |
|
|||| ||||||||||||||||||| || || |||||||||||||||||| |||||||| |||| || | | |||||||||||||||||||||||| | |
|
|
| T |
8882814 |
aaacacctaaaagaatttgaaaataagctccatagttcaaatgatggttataaaactaaatttttttatatctaaaatggtgacaattattttgtataga |
8882913 |
T |
|
| Q |
484 |
aatgctcaaatgcagaaatatacaaccgatgatac |
518 |
Q |
| |
|
|||| ||||||| | |||||||| | |||||||| |
|
|
| T |
8882914 |
aatgttcaaatgtaagaatatacagcggatgatac |
8882948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 8862973 - 8862894
Alignment:
| Q |
106 |
tggtttacctgcttttttatatgcatagcttgttccttcacatgatacgcgtaacgcttttaatccctttttggactgttccactta |
192 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
8862973 |
tggtttatctgctttttgatatgcatggcttgttccttcacat-------gccacgcttttaagccctttttggactgttccactta |
8862894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University