View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_90 (Length: 241)
Name: NF1854_low_90
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 11848349 - 11848133
Alignment:
| Q |
11 |
gcataggcaatgaagtttcacaacaatatcttccattacaaccattactactcaaattgaagta---gctgtttatgttgttgtcatcgcaaattgatac |
107 |
Q |
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| T |
11848349 |
gcataggcaatgaagtttcacaacaatatcttccattacaaccatcactactcaaattgaagtaattgctgtttatgttgttgtcatcgcaaattgatac |
11848250 |
T |
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| Q |
108 |
acaaccaccaaccattgttccacttgattgtataaaagcaagattgttacatccaacggctagaaatttgttgtaatcctgtgaatatatgaaaggaccg |
207 |
Q |
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| T |
11848249 |
acaaccaccaaccatgtttccacttgattgtataaaagcaagattgttacatccaacagctagaaatttgttgtaatcctgtgaatatatgaaaggaccg |
11848150 |
T |
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| Q |
208 |
cctccaaggtttataat |
224 |
Q |
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| T |
11848149 |
cctccaaggtttataat |
11848133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 11843661 - 11843453
Alignment:
| Q |
14 |
taggcaatgaagtttcacaacaatatcttccattacaaccattactactcaaattgaagtagctgtttatgttgttgtcatcgcaaattgatacacaacc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||| ||||||||| | |||| | |||| ||||||||||||||||| ||||| |
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| T |
11843661 |
taggcaatgaagtttcacaacaatatcttccattgcaacggtcgttactggaattgaagttgttgttaaagttgccatcatcgcaaattgatacgcaacc |
11843562 |
T |
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| Q |
114 |
accaaccattgttccacttgattgtataaaagcaagattgttacatccaacggctagaaatttgttgtaatcctgtgaatatatgaaaggaccgcctcca |
213 |
Q |
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| T |
11843561 |
accaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctagaaatttgttgtaactctgggaatacataaaaggactaactcca |
11843462 |
T |
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| Q |
214 |
aggtttata |
222 |
Q |
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| T |
11843461 |
aggtttata |
11843453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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