View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_92 (Length: 240)
Name: NF1854_low_92
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28519443 - 28519669
Alignment:
| Q |
1 |
cgtttgaaggaggaatacactcatgcaataagatggaatagtttgagcaactggcttgatgaaaacctctttacccacttgtgataaaactttactactc |
100 |
Q |
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| T |
28519443 |
cgttggaaggaggaatacactcatgcaataagataaaatagtttgagcaactggcttgatgaaaacctctttacccgcttgtgataaaactttactactc |
28519542 |
T |
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| Q |
101 |
caagaagagatacgcttccacaccatatcattgatataattaaaaactgatttcttgctactgcctaccatagaagggagtcctaaatatttttccgtcc |
200 |
Q |
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| T |
28519543 |
caagaagagatacgcttccacaccatatcattgatataattaaaaatagatttcttgctactgcctttcatagaagggagtcctaaatattttcccgtcc |
28519642 |
T |
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| Q |
201 |
caatacactccgtcacttgaagaatat |
227 |
Q |
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| T |
28519643 |
caatacactccgtcatttgaagaatat |
28519669 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1503786 - 1503843
Alignment:
| Q |
18 |
cactcatgcaataagatggaatagtttgagcaactggcttgatgaaaacctctttacc |
75 |
Q |
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|||||||||||||||| |||||| ||| ||||||| ||||| |||||||||||||| |
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| T |
1503786 |
cactcatgcaataagaaggaataacttgggcaactgatttgattaaaacctctttacc |
1503843 |
T |
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