View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_94 (Length: 237)
Name: NF1854_low_94
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_94 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 42804853 - 42804987
Alignment:
| Q |
76 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
175 |
Q |
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| T |
42804853 |
atataagtttattgccatttttcactaactgtcgcatataatttcaacatgaaagaacatgagaggatctattctcattgaagttaagttatgctttctt |
42804952 |
T |
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| Q |
176 |
ctatgttactttggattgaggttttaatttcattt |
210 |
Q |
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| T |
42804953 |
ctatgttactttggattgaggttttaatttcattt |
42804987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 42762451 - 42762585
Alignment:
| Q |
76 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
175 |
Q |
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| T |
42762451 |
atataagtttattgccgtttttcactaactgtcacatataattttaacatgaaagagcatgagaggatccattctcattgaagtgaatttatgctttctt |
42762550 |
T |
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| Q |
176 |
ctatgttactttggattgaggttttaatttcattt |
210 |
Q |
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| T |
42762551 |
ctatgttactttggattgaagttttaatttcattt |
42762585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 42761122 - 42761156
Alignment:
| Q |
25 |
atatgtatggtaaatgcggggagattggtgatgct |
59 |
Q |
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| T |
42761122 |
atatgtatggtaaatgcggtgagattggtgatgct |
42761156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 33048811 - 33048931
Alignment:
| Q |
80 |
aagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctat |
179 |
Q |
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| T |
33048811 |
aagtttattgccgtttttcactaactgtcgcatataattttaaca----------tgagaggatccattctcattgaagttaagttatgctttcttctat |
33048900 |
T |
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| Q |
180 |
gttactttggattgaggttttaatttcattt |
210 |
Q |
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| T |
33048901 |
gttacttaggattgaggttttaatttcattt |
33048931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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