View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1854_low_96 (Length: 236)
Name: NF1854_low_96
Description: NF1854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1854_low_96 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 37975953 - 37975733
Alignment:
| Q |
16 |
catatatcaaatccttatgccttttttccatgtatattgtgtactataaaaatcgagctgaaaagatatatatcctcgaaggatggatgtatgacaaaca |
115 |
Q |
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| T |
37975953 |
catatatcaaatccttatgccttttttccatgtatattttgtactataaaaatcgagctgaaaagatatatatactcgaaggatggatgtatgacaaaca |
37975854 |
T |
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| Q |
116 |
tttctaactgaattatataagagaatatcattaatcaaattcacaacagtccttatacttttcccttatcctaaaaaccaaagcatataatagaacgaag |
215 |
Q |
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| T |
37975853 |
tttctaactgaattatataagagaatatcattaatcaaattcacaacagtccttatacttttccgttatcctaaaaaccaaagcatataatagaacgaag |
37975754 |
T |
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| Q |
216 |
tttcggtattaattagaacac |
236 |
Q |
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||||||||||||||||||||| |
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| T |
37975753 |
tttcggtattaattagaacac |
37975733 |
T |
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