View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18550_high_10 (Length: 245)
Name: NF18550_high_10
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18550_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 11128411 - 11128196
Alignment:
| Q |
24 |
ccaagtagttcaattccaac-gaaaaatcaaataatcctgtaaaggttgaagtttgaaagaatttgaagaaaacaatatttaaacaattagtaatcacaa |
122 |
Q |
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| T |
11128411 |
ccaagtagttcaattccaaccgaaaaatcaaataatcctgtaaaggttgaagtttgaaagaatttgaagaaaacaatatttaaacaattagtaatcacga |
11128312 |
T |
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| Q |
123 |
ttcatacacaatccgtaacactcaaggttaacattgagacacgaaacatgctataagttaaaatatctttacctggagtatcaataacattcacaatttg |
222 |
Q |
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| T |
11128311 |
ttcatacccaatccgtaacactcaaggttaacattgagacacgaaacaggctataagttaaaatatctttacctggagtatcaataacattcacaatttg |
11128212 |
T |
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| Q |
223 |
tccatcattcatctca |
238 |
Q |
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| T |
11128211 |
tccatcattcagctca |
11128196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 11111157 - 11111107
Alignment:
| Q |
190 |
tttacctggagtatcaataacattcacaatttgtccatcattcatctcact |
240 |
Q |
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| T |
11111157 |
tttacctggactatcaataacattaacagtctgtccatcgttcatctcact |
11111107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 11076455 - 11076407
Alignment:
| Q |
190 |
tttacctggagtatcaataacattcacaatttgtccatcattcatctca |
238 |
Q |
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| T |
11076455 |
tttacctggagtgtcaataacattgacaatctgtccatcactcaactca |
11076407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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