View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18550_high_4 (Length: 387)
Name: NF18550_high_4
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18550_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 1824259 - 1824631
Alignment:
| Q |
10 |
aagaaaatctaaggaaaacgcggaattcgtacggtataagctctagtatatgtactataggttgaaaagtacgtttagtgtaagttctgttacaaagttc |
109 |
Q |
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| T |
1824259 |
aagaaaatctaaggaaaacgcggaattcgtacggtataagctctagtatatgtactataggttgaaaagtacgtttagtgtaagttctgttacaaagttc |
1824358 |
T |
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| Q |
110 |
tgctgaaaatgaagtgtctattaatttattaaacgcgattttgttcaagcttagcatgatacagctgttctcaaactctatagagaaccaccattgattt |
209 |
Q |
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| T |
1824359 |
tgctgaaaatgaagtgtctattaatttattaaacacgattttgttgaagcttagcatgatacagctgttctcaaactctatagagaaccaccattgattt |
1824458 |
T |
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| Q |
210 |
tcttattacgtgtatgggcacccaattatatggaaaattagtatatctaattaactatgatcattaaccaccattgatacctcttaaaaatgaaggtatt |
309 |
Q |
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| T |
1824459 |
tcttattacgtgtatgggca-ccaattatatggaaaattagtatatc----taactatgatcattaaccaccattgatacctcttaaaaatgaaggtatt |
1824553 |
T |
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| Q |
310 |
gactttattaatatagcatactggagccctctatttttagtatgatagattcactcaattctggtttcacgttgagaa |
387 |
Q |
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| T |
1824554 |
gactttattaatatagcatactggagccctctatttttagtatgatagattcactcaattctggtttcacgttgagaa |
1824631 |
T |
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