View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18550_high_7 (Length: 333)
Name: NF18550_high_7
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18550_high_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 139 - 333
Target Start/End: Original strand, 44419518 - 44419711
Alignment:
| Q |
139 |
gcagcttattacaaatgcagaactagaagagtcacctctgtatgttccattacatgattttgaaggtttgagggagattaatttatggtcataaataaac |
238 |
Q |
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| T |
44419518 |
gcagcttattacaaatgcagaactagaagagtcacctctgtatgttccattacatgattttgaaggtttgagggagattaatttatggtcataaataaac |
44419617 |
T |
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| Q |
239 |
attatttgagtgaaggacatttaccttaagaaagtagacaaaatgatttgagtttattgttgcagacattgaagaaaaagatgtgaaattcatag |
333 |
Q |
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| T |
44419618 |
attatttgagtgaaggatatttaccttaagaaagtagac-aaatgatttgagtttattgttgcagacattgaagaaaaagatgtgaaattcatag |
44419711 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44419379 - 44419490
Alignment:
| Q |
1 |
ccaataattggaaccatattgttgtacattttgctcnnnnnnnntcttattcatgaggtagtatacacttggtt-catgaatacacgacattatacaaca |
99 |
Q |
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| T |
44419379 |
ccaataattggaaccatattgttgtacattttgctcaaaaaaaatcttattcatgaggtagtatacacttggtttcatgaatacacgacattatacaaca |
44419478 |
T |
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| Q |
100 |
tataacaagtgc |
111 |
Q |
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| T |
44419479 |
tataactagtgc |
44419490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 39558572 - 39558635
Alignment:
| Q |
145 |
tattacaaatgcagaactagaagagtcacctctgtatgttccattacatgattttgaaggtttg |
208 |
Q |
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| T |
39558572 |
tattacaaatgcagatatagaagagccacctctttatgttccattacatcattttgaaggtttg |
39558635 |
T |
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