View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18550_low_1 (Length: 650)

Name: NF18550_low_1
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18550_low_1
NF18550_low_1
[»] chr7 (12 HSPs)
chr7 (204-633)||(5895362-5895799)
chr7 (13-170)||(5895834-5895991)
chr7 (50-116)||(18375653-18375718)
chr7 (300-394)||(5881409-5881503)
chr7 (50-115)||(9230649-9230714)
chr7 (50-115)||(25024772-25024837)
chr7 (568-630)||(5880934-5880996)
chr7 (50-113)||(25491496-25491559)
chr7 (50-116)||(9557938-9558004)
chr7 (50-115)||(19400232-19400297)
chr7 (58-115)||(25253275-25253332)
chr7 (55-115)||(40703052-40703112)
[»] chr4 (7 HSPs)
chr4 (50-115)||(31002587-31002652)
chr4 (50-116)||(17359382-17359448)
chr4 (54-115)||(4325665-4325726)
chr4 (50-115)||(24104464-24104529)
chr4 (78-117)||(10058706-10058745)
chr4 (58-115)||(3074627-3074684)
chr4 (29-86)||(29370382-29370439)
[»] chr8 (5 HSPs)
chr8 (50-115)||(24592197-24592262)
chr8 (50-115)||(13152254-13152319)
chr8 (50-115)||(21958764-21958829)
chr8 (78-115)||(36406378-36406415)
chr8 (50-115)||(40145870-40145935)
[»] chr3 (8 HSPs)
chr3 (50-115)||(17073852-17073917)
chr3 (51-112)||(9743519-9743580)
chr3 (50-116)||(24130362-24130428)
chr3 (50-116)||(24988672-24988738)
chr3 (50-115)||(3856727-3856792)
chr3 (78-115)||(12910021-12910058)
chr3 (78-115)||(14461260-14461297)
chr3 (78-115)||(37516816-37516853)
[»] chr1 (10 HSPs)
chr1 (51-113)||(26272791-26272853)
chr1 (50-115)||(30055071-30055136)
chr1 (78-119)||(33468856-33468897)
chr1 (50-119)||(48606469-48606537)
chr1 (50-116)||(30558865-30558930)
chr1 (49-115)||(48900640-48900706)
chr1 (78-115)||(25007653-25007690)
chr1 (50-119)||(42309895-42309964)
chr1 (78-115)||(44305601-44305638)
chr1 (78-118)||(11647353-11647393)
[»] chr5 (4 HSPs)
chr5 (50-115)||(15730833-15730898)
chr5 (50-117)||(22542148-22542215)
chr5 (51-115)||(22712760-22712824)
chr5 (50-86)||(27168692-27168728)
[»] chr2 (5 HSPs)
chr2 (54-114)||(30547179-30547239)
chr2 (50-113)||(35649537-35649600)
chr2 (78-115)||(1542854-1542891)
chr2 (78-115)||(13203957-13203994)
chr2 (51-116)||(27925604-27925669)
[»] scaffold0198 (1 HSPs)
scaffold0198 (62-116)||(1658-1712)
[»] chr6 (3 HSPs)
chr6 (50-116)||(30621415-30621481)
chr6 (50-86)||(11971209-11971245)
chr6 (51-91)||(25599406-25599446)
[»] scaffold0015 (1 HSPs)
scaffold0015 (50-115)||(214019-214084)


Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 204 - 633
Target Start/End: Complemental strand, 5895799 - 5895362
Alignment:
Q  204 aagaagaaaggataaaagaatccaaatccctaaaaccctattttccatttccttctttccctcactcaaaatctcattccttcaattggttctttcacaa 303  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895799 aagaagaaaggataaaagaatccaaatccctaaaaccctagtttccatttccttctttccctcactcaaaatctcattccttcaattggttctttcacaa 5895700  T
Q  304 caatgacaaatcaatgttctgttcttcaacttcttcttcgcactcaccacaaaattcccaatcaatctcttccactttgcactttctcttccattcccaa 403  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895699 caatgacaaatcaatgttccgttcttcaacttcttcttcgcactcaccacaaaattcccaatcaatctcttccactttgcactttctcttccattcccaa 5895600  T
Q  404 caccagccattccaaattccatacaaaccctaatgtcaaccatttctcttccgaacc--------ctaataccatggatatattctcaaaactcaaatat 495  Q
    ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||        |||| ||| ||||||||||||||||||||||||||    
T  5895599 cacctaccattccaaattccatacaaaccctaatttcaaccatttctcttccgaacccgttctcgctaacaccgtggatatattctcaaaactcaaatat 5895500  T
Q  496 cttagtgccatcaacaaagacctcgatttaaatcacgtttcgattagtcacgctgctgttaacgcaaggaagtttgaaaagggtggaatggatggtgagg 595  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||    
T  5895499 cttagtgccatcaacaaagacctcgattcaaatcacgtttcgattagtcacgatgctgtcaacggaaggaagtttgaaaagtgtggaatggatggtgagg 5895400  T
Q  596 ctgtgaaatccatggaattgtttgataaggatacattt 633  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  5895399 ctgtgaaatccagggaattgtttgataaggatagattt 5895362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 5895991 - 5895834
Alignment:
Q  13 aatatcagcccatattcgccacaacccatagtttctctatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcc 112  Q
    |||||||||||| || | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||    
T  5895991 aatatcagcccagatccaccacaacccatactttctctatgt-acatgtgaatttgcagtcaaaattttgcccatactctacaaaatccttggctctgcc 5895893  T
Q  113 actagtttgaatggccgtgaaaaagcataaatatc-acctactccaagttctgaaagcc 170  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  5895892 actagtttgaatggccgtgaaaaagcataaatatctacctactccaagttcagaaagcc 5895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 18375653 - 18375718
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  18375653 tatgtcacatgtga-tttgctgtcaaaattttacccatactctacaaaattcctggctccgccacta 18375718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 394
Target Start/End: Complemental strand, 5881503 - 5881409
Alignment:
Q  300 acaacaatgacaaatcaatgttctgttcttcaacttcttcttcgcactcaccacaaaattcccaatcaatctcttccactttgcactttctcttc 394  Q
    |||||||||| |||||||||     ||||||| |||||||||||||||||||||||||| |||| ||||||||   ||||| || ||||||||||    
T  5881503 acaacaatgagaaatcaatggcgcattcttcatcttcttcttcgcactcaccacaaaatccccattcaatctcacacacttcgctctttctcttc 5881409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 9230649 - 9230714
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||||||||||||| ||||||||||||||| |||  | |||||| || |||||||||||    
T  9230649 tatgtcacatgtgaatttgcaatcaaaattttgcccaggcttgataaaatttctagctccgccact 9230714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 25024772 - 25024837
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||| |||||||||||| || |||||||||| ||  ||||| |||||||||||||||||||||    
T  25024772 tatgtcatatgtgaatttgcggttaaaattttgctcagactctataaaattcctggctccgccact 25024837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 568 - 630
Target Start/End: Complemental strand, 5880996 - 5880934
Alignment:
Q  568 tttgaaaagggtggaatggatggtgaggctgtgaaatccatggaattgtttgataaggataca 630  Q
    |||||||||||||||||| ||||||| |||||||| |  | ||| ||||||||||||||||||    
T  5880996 tttgaaaagggtggaatgaatggtgatgctgtgaagttgaaggagttgtttgataaggataca 5880934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 25491559 - 25491496
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcca 113  Q
    |||||||||||| ||||||| || |||||||||||||  ||||| |||||  ||||||||||||    
T  25491559 tatgtcacatgtaaatttgcggttaaaattttgcccagactctataaaatatctggctccgcca 25491496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 9557938 - 9558004
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||| ||||||| ||||||||||||| ||  ||| | |||||| ||| |||||||||||    
T  9557938 tatgtcacatgtaaatttgcggtcaaaattttgctcagactcgataaaatttctgactccgccacta 9558004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 19400232 - 19400297
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||  | ||  ||||||||| |||||| |||||| ||||||||||||||    
T  19400232 tatgtcacatatgaatttgcgataaactttttgcccaggctctataaaatttctggctccgccact 19400297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 25253275 - 25253332
Alignment:
Q  58 atgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||| |||||| ||||||| | |||||||||||||  || ||||||||||    
T  25253275 atgtgaatttgcggtcaaatttttgcctaggctctacaaaatttttgactccgccact 25253332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 40703052 - 40703112
Alignment:
Q  55 cacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||||||  |||||||||||||| | |||| | ||||||  |||||||||||||    
T  40703052 cacatgtgaatttgaggtcaaaattttgcctaggctcgataaaatttatggctccgccact 40703112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 31002652 - 31002587
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||  |||||||||||||    
T  31002652 tatgtcacatgtgaatttgcggtcaaaattttgcccaggctctacaaaatttatggctccgccact 31002587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 17359382 - 17359448
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||| |||||    
T  17359382 tatgtcacatgtgaatttgcagtcaaaattttgcacatgctcgataaaattccttgctccgtcacta 17359448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 4325665 - 4325726
Alignment:
Q  54 tcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||| ||||||| ||||||||||||||||||||| |  ||||| ||||||||||||||    
T  4325665 tcacatgtaaatttgcggtcaaaattttgcccatgctcgatgaaatttctggctccgccact 4325726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 24104529 - 24104464
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||| ||| ||||||||||| |||| |||| | ||||||  |||||||||||||    
T  24104529 tatgtcacatgtgaatatgcggtcaaaattttacccaagctcgataaaatttatggctccgccact 24104464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 10058706 - 10058745
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccactag 117  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  10058706 ttttgcccaggctctataaaattcctggctccgccactag 10058745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 3074627 - 3074684
Alignment:
Q  58 atgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| ||||||||||||| ||||  ||| | ||||||||| |||||||||||    
T  3074627 atgtgaatttacagtcaaaattttacccagactcgataaaattcctagctccgccact 3074684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 29370382 - 29370439
Alignment:
Q  29 cgccacaacccatagtttctctatgtcacatgtgaatttgcagtcaaaattttgccca 86  Q
    |||||||||||||| ||||| ||| |||||| | ||||| | ||||||||||||||||    
T  29370382 cgccacaacccatactttctttatatcacatataaatttacggtcaaaattttgccca 29370439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 24592262 - 24592197
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||||| | || |||||||||| || |||||| |||||||||||||||||||||    
T  24592262 tatgtcacatgtgaatttacggttaaaattttgctcaggctctataaaattcctggctccgccact 24592197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 13152319 - 13152254
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||| |||||||||||||  |||||||||||||||  ||| | ||||||||| |||||||||||    
T  13152319 tatgtcgcatgtgaatttgcgatcaaaattttgcccagactcgataaaattcctagctccgccact 13152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 21958764 - 21958829
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||  | ||  ||||||||| |||||| ||||||||| |||||||||||    
T  21958764 tatgtcacatatgaatttgcgataaactttttgcccaagctctataaaattcctagctccgccact 21958829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 36406415 - 36406378
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  36406415 ttttgcccaggctctataaaattcctggctccgccact 36406378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 40145935 - 40145870
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| | ||||||| ||||||||||||||||   |||| ||||||  |||||||||||||    
T  40145935 tatgtcacatataaatttgcggtcaaaattttgcccaaaatctataaaatttatggctccgccact 40145870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 17073917 - 17073852
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||||||||||||| |||||||||||| |||||| | |||||| |||||    
T  17073917 tatgtcacatatgaatttgcagtcaaaatttggcccatgctctataaaatttcaggctccaccact 17073852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 9743519 - 9743580
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcc 112  Q
    |||| |||||||||||||| ||||||||||||||||  || || ||||||||||||||||||    
T  9743519 atgtaacatgtgaatttgcggtcaaaattttgcccagactatataaaattcctggctccgcc 9743580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 24130428 - 24130362
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaatttt-gcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||| | |||||| |||| | |||  ||||||||||||||||||||||||||||    
T  24130428 tatgtcacatgtgaatttacggtcaaattttttggccaa-ctctacaaaattcctggctccgccacta 24130362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 24988738 - 24988672
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||||  ||||||||||| ||||  ||||| |||||| ||| |||| ||||||    
T  24988738 tatgtcacatgtgaatttgtggtcaaaattttacccacactctataaaatttctgactccaccacta 24988672  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 3856792 - 3856727
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||||||| || ||||||||   || |||| | |||||| ||||||||||||||    
T  3856792 tatgtcacatgtgaatttgcggtgaaaattttattcaggctcgataaaatttctggctccgccact 3856727  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 12910021 - 12910058
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  12910021 ttttgcccaggctctataaaattcctggctccgccact 12910058  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 14461260 - 14461297
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  14461260 ttttgcccaggctctataaaattcctggctccgccact 14461297  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 37516816 - 37516853
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  37516816 ttttgcccaggctctataaaattcctggctccgccact 37516853  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 26272853 - 26272791
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcca 113  Q
    ||||||||||| ||||||| || |||| ||||||||||| ||| ||||||| |||||||||||    
T  26272853 atgtcacatgtaaatttgcggttaaaaatttgcccatgcactataaaattcatggctccgcca 26272791  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 30055071 - 30055136
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||| |||||||||||| |||||||||||| |||  ||||| ||||||| || ||||||||||    
T  30055071 tatgtcatatgtgaatttgcggtcaaaattttgtccagactctataaaattcttgactccgccact 30055136  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 33468897 - 33468856
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccactagtt 119  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  33468897 ttttgcccaggctctataaaattcctggctccgccactagtt 33468856  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 48606537 - 48606469
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccactagtt 119  Q
    ||||| |||||||||||||| ||||||||||||| ||  ||||| ||||||||| ||||||| |||||||    
T  48606537 tatgttacatgtgaatttgcggtcaaaattttgctcagactctataaaattcct-gctccgctactagtt 48606469  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 30558930 - 30558865
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||| |||||||||| |||| ||  ||||| |||||| ||||| |||||||||    
T  30558930 tatgtcacatgtgaatttacagtcaaaatcttgcgcaaactctataaaatttctggc-ccgccacta 30558865  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 48900706 - 48900640
Alignment:
Q  49 ctatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||| |||||||||  | ||| ||||||||  ||||||  ||||||||||||||||||||    
T  48900706 ctatgtcacatttgaatttgcgattaaatttttgcccgggctctaagaaattcctggctccgccact 48900640  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 25007653 - 25007690
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  25007653 ttttgcccaggctctataaaattcctggctccgccact 25007690  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 42309964 - 42309895
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccactagtt 119  Q
    |||||||||||||||||| |  | ||  ||||||||| |||| | ||| |||||||||||||||||||||    
T  42309964 tatgtcacatgtgaatttacgattaattttttgcccaagctccataaatttcctggctccgccactagtt 42309895  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 44305601 - 44305638
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  44305601 ttttgcccaggctctataaaattcctggctccgccact 44305638  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 11647353 - 11647393
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccactagt 118  Q
    ||||||||| |||||| ||||||||||||||| ||||||||    
T  11647353 ttttgcccaggctctataaaattcctggctccaccactagt 11647393  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 15730898 - 15730833
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||||||||||||| |||||||||||| ||   |||  |||| ||||||||||||||||    
T  15730898 tatgtcacatgtgaatttgcattcaaaattttgctcagattctttaaaaatcctggctccgccact 15730833  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 22542148 - 22542215
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccactag 117  Q
    ||||||| || |||||||||  | |||||||||||||  ||||| ||||||| |||||||||||||||    
T  22542148 tatgtcatatatgaatttgcgataaaaattttgcccagactctagaaaattcttggctccgccactag 22542215  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 22712824 - 22712760
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||| || |||| |||||||||||| |||  ||| | ||||||||| |||||||||||    
T  22712824 atgtcacatgtaaacttgcggtcaaaattttgtccaaactcgataaaattcctagctccgccact 22712760  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 27168728 - 27168692
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgccca 86  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  27168728 tatgtcaaatgtgaatttgcaatcaaaattttgccca 27168692  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 30547179 - 30547239
Alignment:
Q  54 tcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccac 114  Q
    |||||||||||||||| ||||||||||| ||||  ||| | |||||||||| |||||||||    
T  30547179 tcacatgtgaatttgcggtcaaaattttacccaaactcaataaaattcctgactccgccac 30547239  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 35649600 - 35649537
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcca 113  Q
    ||||||||||||||||||||  | ||| |||||||||  ||||| |||||| ||||||||||||    
T  35649600 tatgtcacatgtgaatttgcgattaaatttttgcccaaactctataaaatttctggctccgcca 35649537  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 1542854 - 1542891
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  1542854 ttttgcccaggctctataaaattcctggctccgccact 1542891  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 13203957 - 13203994
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  13203957 ttttgctcatgctctataaaattcctggctccgccact 13203994  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 27925669 - 27925604
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    ||||||||||||||||||| ||||||||||||  || |||| | ||||||  |||||||| |||||    
T  27925669 atgtcacatgtgaatttgcggtcaaaattttgttcaggctcgataaaatttatggctccgtcacta 27925604  T

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Target: scaffold0198 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 1658 - 1712
Alignment:
Q  62 gaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||| |||||||||||||| | | || | ||||||||||||||||||||||    
T  1658 gaatttgcggtcaaaattttgccaaagttcaataaaattcctggctccgccacta 1712  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 30621415 - 30621481
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||| |||||||||||||  |||||| ||||||||  ||| | ||||||||| ||||||||||||    
T  30621415 tatgtcgcatgtgaatttgcgatcaaaactttgcccaaactcgataaaattcctagctccgccacta 30621481  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 11971209 - 11971245
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgccca 86  Q
    |||||||||||||||||||| || |||||||||||||    
T  11971209 tatgtcacatgtgaatttgcggttaaaattttgccca 11971245  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 25599406 - 25599446
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctc 91  Q
    ||||| ||||||||||||| |||||||||||||||| ||||    
T  25599406 atgtcgcatgtgaatttgcggtcaaaattttgcccaggctc 25599446  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 214084 - 214019
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||  | ||  ||||||||| |||||| ||||||||| |||||||||||    
T  214084 tatgtcacatatgaatttgcgataaactttttgcccaagctctataaaattcctagctccgccact 214019  T

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