View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18550_low_2 (Length: 547)

Name: NF18550_low_2
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18550_low_2
NF18550_low_2
[»] chr4 (10 HSPs)
chr4 (15-529)||(55705559-55706073)
chr4 (310-501)||(47293429-47293620)
chr4 (301-503)||(56208510-56208712)
chr4 (337-482)||(45876736-45876881)
chr4 (337-470)||(45858817-45858950)
chr4 (319-501)||(54304200-54304388)
chr4 (24-157)||(45878669-45878802)
chr4 (24-112)||(45860198-45860286)
chr4 (89-157)||(47293222-47293290)
chr4 (55-150)||(56208877-56208972)
[»] chr5 (5 HSPs)
chr5 (337-483)||(35854542-35854688)
chr5 (339-505)||(10521303-10521469)
chr5 (27-156)||(35802699-35802828)
chr5 (337-413)||(35802504-35802580)
chr5 (63-139)||(10521033-10521109)
[»] chr8 (4 HSPs)
chr8 (317-500)||(7972058-7972241)
chr8 (301-499)||(7961689-7961887)
chr8 (26-157)||(7972414-7972545)
chr8 (24-65)||(7962124-7962165)
[»] chr2 (2 HSPs)
chr2 (339-470)||(24357457-24357588)
chr2 (55-157)||(24354011-24354113)


Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 15 - 529
Target Start/End: Original strand, 55705559 - 55706073
Alignment:
15 aatatgggaagaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
55705559 aatatgggaagaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagccagtgcaggatagtacatggcaatgggagct 55705658  T
115 ggaataatagtagcagaaaatcttacattaactggttcaattgaaggagcagtcactcaaaacgtaaatcttgagaatctttatgaaactattcctctga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
55705659 ggaataatagtagcagaaaatcttacattaactggttcaattgaaggagcagtcactcaaaacgtaaatcttgagaatctttttgaaactattcctctga 55705758  T
215 aagaaattgtacggaggggtaaactctctactgatacgttggttgatgagctatttgccaagagagaagatcacgattatacattattcgagctaatgcg 314  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||    
55705759 aagaaattgtacggagcggtaaactctctactgatacgttggttgatgagctatttgccaagagagaagatcacgatcatacattatttgagctaacgcg 55705858  T
315 gctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgcta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55705859 gctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgcta 55705958  T
415 ttggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagatctgatggact 514  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55705959 ttggtgggatatcgcgtgctattgctattacaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagatctgatggact 55706058  T
515 tagcacattctgatg 529  Q
    |||||||||||||||    
55706059 tagcacattctgatg 55706073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 310 - 501
Target Start/End: Original strand, 47293429 - 47293620
Alignment:
310 atgcggctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttga 409  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||| |||||||| |||| ||||||| ||||||||||||||||||    
47293429 atgcggctctttccagatcaatgaccatagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttga 47293528  T
410 tgctattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaa 501  Q
    ||||||||||||  ||||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||| | | ||||||||| |||||    
47293529 tgctattggtggactatcgcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcgctcaa 47293620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 301 - 503
Target Start/End: Complemental strand, 56208712 - 56208510
Alignment:
301 ttcgagctaatgcggctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatgg 400  Q
    |||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||| || |||||||||| |||||||||||| |||  ||||| |||    
56208712 ttcgagataatgcggctctttccagatcaatgactatagatgagatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttgg 56208613  T
401 tttggttgatgctattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctca 500  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||  |||||||||| ||| | | |||| |||||||||  |||||    
56208612 tttggttgatgctattggtgggctatctcgtgctattgctatagcaaaattgaaggctggtatacctcaagacaaacatgttactgttgtggacatctca 56208513  T
501 aga 503  Q
    |||    
56208512 aga 56208510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 337 - 482
Target Start/End: Complemental strand, 45876881 - 45876736
Alignment:
337 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 436  Q
    |||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||| ||||||||    
45876881 tagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctat 45876782  T
437 tgctattgcaaaattgaaagctaatatacctcaaaacagagaggtt 482  Q
    |||||| ||||||||||||||||||||||||||| ||||| |||||    
45876781 tgctatagcaaaattgaaagctaatatacctcaagacagacaggtt 45876736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 337 - 470
Target Start/End: Complemental strand, 45858950 - 45858817
Alignment:
337 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 436  Q
    |||||||||||||||||| ||| || | |||||||||||||||||| || |||| |||||||||| |||||||||||||||||||| |||| ||||||||    
45858950 tagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctat 45858851  T
437 tgctattgcaaaattgaaagctaatatacctcaa 470  Q
    |||||| || |||||||| || ||||||||||||    
45858850 tgctatagccaaattgaaggccaatatacctcaa 45858817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 319 - 501
Target Start/End: Original strand, 54304200 - 54304388
Alignment:
319 tttccagatctatgactatagacaagatggaagaggttgcgcatgggaggg------tttggaccggtaaagacgcagcatctcatggtttggttgatgc 412  Q
    |||||| ||| ||||| |||||||| |||||||||||| | || |||||||      ||||||| ||||| |||||| ||||||  ||||||||||||||    
54304200 tttccaaatcaatgacaatagacaaaatggaagaggttccacaggggagggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgc 54304299  T
413 tattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaa 501  Q
    |||||| ||||| || |||||||||||||| ||||||||||| || |||||||||||||| || ||||||| | |||| || |||||||    
54304300 tattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctcaaaatagtgaggttactcttgttgaactctcaa 54304388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 45878802 - 45878669
Alignment:
24 agaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataata 123  Q
    ||||||||||  ||| |||||| ||||||| |||||||||||||||| ||| ||||||||||||  |||||| ||||||||||||||||| |||   ||     
45878802 agaaatcaggcttctggctgccaaaaaaccagtcattgcttcaatgtctgatgtggcagcaagtggaggatactacatggcaatgggagcaggagctatt 45878703  T
124 gtagcagaaaatcttacattaactggttcaattg 157  Q
    || ||||||| ||| || ||||||||||||||||    
45878702 gttgcagaaagtctaaccttaactggttcaattg 45878669  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 45860286 - 45860198
Alignment:
24 agaaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggag 112  Q
    ||||||||||  |||||| ||| |||||||  ||||||||||||||| ||| |||||||| |||  |||||| || ||||| |||||||    
45860286 agaaatcaggcttcttgcagccaaaaaaccaatcattgcttcaatgtctgatgtggcagctagtggaggatactatatggcgatgggag 45860198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 47293222 - 47293290
Alignment:
89 caggatagtacatggcaatgggagctggaataatagtagcagaaaatcttacattaactggttcaattg 157  Q
    ||||||| ||| |||||||||| || ||| | || || |||||||||||||| ||||||||||||||||    
47293222 caggatactacgtggcaatgggcgcaggagttattgttgcagaaaatcttaccttaactggttcaattg 47293290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 56208972 - 56208877
Alignment:
55 gtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagtagcagaaaatcttacattaactggt 150  Q
    ||||||||||| |||| | |  || ||||||||  ||||||  |||||||||||||||| ||| | || || |||||||||||||| |||||||||    
56208972 gtcattgcttcgatgtctcatatgacagcaagtggaggataccacatggcaatgggagcaggagttattgttgcagaaaatcttaccttaactggt 56208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 337 - 483
Target Start/End: Original strand, 35854542 - 35854688
Alignment:
337 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 436  Q
    ||||||||||| || ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
437 tgctattgcaaaattgaaagctaatatacctcaaaacagagaggtta 483  Q
    |||||| ||||||||||| || |||||||||||||||||| ||||||    
35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtta 35854688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 339 - 505
Target Start/End: Original strand, 10521303 - 10521469
Alignment:
339 gacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattg 438  Q
    ||||||||| ||||| || | ||| ||||| |||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
439 ctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagatc 505  Q
    |||| |||||||| || || |||||||||||||||| | |||||| | |||| ||||||||||||||    
10521403 ctatcgcaaaattcaaggccaatatacctcaaaacaaacaggttaatcttgtcgagctctcaagatc 10521469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 35802828 - 35802699
Alignment:
27 aatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagta 126  Q
    |||||| ||||||||| |  ||||||| |||||||||||||||| ||| | |||| ||||| ||||||| ||||||||||||||||| |||   || |||    
35802828 aatcagatctcttgcttcaaaaaaacccgtcattgcttcaatgtctgatgcggcaacaagtgcaggatactacatggcaatgggagcaggagctatcgta 35802729  T
127 gcagaaaatcttacattaactggttcaatt 156  Q
    |||||||||||||| |||||||||||||||    
35802728 gcagaaaatcttactttaactggttcaatt 35802699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
337 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgct 413  Q
    ||||||||||| || ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 10521033 - 10521109
Alignment:
63 ttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagtagcagaaaatctta 139  Q
    |||||||| ||| || ||||||||| ||||||| |||||||||| |||||| |||   || ||||||||||||||||    
10521033 ttcaatgtctgatgtagcagcaagtgcaggatactacatggcaacgggagcaggagatatcgtagcagaaaatctta 10521109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 317 - 500
Target Start/End: Complemental strand, 7972241 - 7972058
Alignment:
317 tctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctatt 416  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||  ||||| |||||||||||||||| |||| |||| |||||||||| ||||||||     
7972241 tctttccagatcaatgactgtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatc 7972142  T
417 ggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctca 500  Q
     ||||  ||||||||||||||||||| ||||||||||| || ||| | |||||||||||| | |||| | ||||||||||||||    
7972141 agtggactatcgcgtgctattgctatagcaaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctca 7972058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 301 - 499
Target Start/End: Complemental strand, 7961887 - 7961689
Alignment:
301 ttcgagctaatgcggctctttccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatgg 400  Q
    |||||| | ||||||||||||| ||||  ||||||||||||||||||||||||||||| || |||||  ||||||| |||||||| |||  |||| |||     
7961887 ttcgagatgatgcggctctttcaagattaatgactatagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatga 7961788  T
401 tttggttgatgctattggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctc 499  Q
    |||||| |||||||||||||| |||||||  ||||||||||| ||||||||||| || ||||| |||||||||| | | |||| | |||||||| ||||    
7961787 tttggtcgatgctattggtggaatatcgcacgctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctc 7961689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 7972545 - 7972414
Alignment:
26 aaatcaggtctcttgctgcccaaaaacctgtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagt 125  Q
    ||||||||||||||||| || ||||||| || |||||||  |||| |||  |||||   ||  ||||||| |||||||||||||| || ||| | || ||    
7972545 aaatcaggtctcttgcttccaaaaaaccagttattgctttgatgtctgatctggcaatgagcgcaggatactacatggcaatgggcgcaggagttattgt 7972446  T
126 agcagaaaatcttacattaactggttcaattg 157  Q
     |||||||| ||||| ||||||||||||||||    
7972445 tgcagaaaaccttaccttaactggttcaattg 7972414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 7962165 - 7962124
Alignment:
24 agaaatcaggtctcttgctgcccaaaaacctgtcattgcttc 65  Q
    |||||||||||||||||||||| ||||||| || ||||||||    
7962165 agaaatcaggtctcttgctgccaaaaaaccagttattgcttc 7962124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 470
Target Start/End: Original strand, 24357457 - 24357588
Alignment:
339 gacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattg 438  Q
    |||||||||||  |||| || || ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||  | || || |||||||    
24357457 gacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattg 24357556  T
439 ctattgcaaaattgaaagctaatatacctcaa 470  Q
    | || ||||||||||| || ||||||||||||    
24357557 ccatagcaaaattgaaggccaatatacctcaa 24357588  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 24354011 - 24354113
Alignment:
55 gtcattgcttcaatgtatgacgtggcagcaagttcaggatagtacatggcaatgggagctggaataatagtagcagaaaatcttacattaactggttcaa 154  Q
    ||||||||||| |||  ||| ||||||||||||  |||||| ||||||||||||||| |||     || || ||||||| |||||| |||||||||||||    
24354011 gtcattgcttcgatggctgatgtggcagcaagtggaggatactacatggcaatgggaactgatgctattgttgcagaaagtcttaccttaactggttcaa 24354110  T
155 ttg 157  Q
    |||    
24354111 ttg 24354113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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