View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18550_low_3 (Length: 501)
Name: NF18550_low_3
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18550_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 45070237 - 45070714
Alignment:
| Q |
14 |
aaataagtagaatattcgaataacatgaagcaagccagcctgacagggacacccatgtatccaccaacaaagccttcaaacttatttggttacttgtgnn |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45070237 |
aaataagtagaatgttcgaataacatgaagcaagccagcctgacagtgccacccatgtatccaccaacaaagccttcaaacttatttggttacttgtgtt |
45070336 |
T |
|
| Q |
114 |
nnnnnn--------gcgaatttgtctgaattcttgccctaagatgtttttatttttaatattgtctctcaatatagttcgtgtcgagtcccccgacagcc |
205 |
Q |
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| T |
45070337 |
ttttttttttttttgcgaatttgtctgaattcttgccctaagatgtttttatttttaatattggctctcaatatagttcgtgtcgagtcccccgacagcc |
45070436 |
T |
|
| Q |
206 |
aaagttcgtaccacctaggttgcacgtacctagcaatgtgtattcttggattttaagtctgacacgactttacaaaatcgacttgatacataaaatatag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45070437 |
aaagttcgtaccacctaggttgcacgtacctagcaatgtgtattcttggattttaagtctgacacgactttacaaaatcgacttgatacataaaatatag |
45070536 |
T |
|
| Q |
306 |
caagcggcatgaacaatttaggataagctcaaattgcaattttaattcaatcctacaaaatgagtttgtaaagtgaaaagtgttcatgttttatacgctc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45070537 |
caagcggcatgaacaatttaggataagctcaaattgcaattttaattcaatcctacaaaatgagtttgtaaagtgaaaagtgttcatgttttatacgctc |
45070636 |
T |
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| Q |
406 |
taattggacgatatctctagtctaatatgagagttgagtgttttgtaatattaatgtcaaaataaatagtgcaagttat |
484 |
Q |
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| T |
45070637 |
taattggacgatatctctggtc-aatatgagagttgagtgttttgtaatattaatgtcaaaataaatagtgcaagttat |
45070714 |
T |
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