View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18550_low_5 (Length: 364)
Name: NF18550_low_5
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18550_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 15166375 - 15166725
Alignment:
| Q |
16 |
gtaagttggcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagat |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15166375 |
gtaagttggcaattttggtattgctctattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagat |
15166474 |
T |
|
| Q |
116 |
agcataataacaaagactcccctttattcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagtt |
215 |
Q |
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||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15166475 |
agcataataacaatgacttccctatattcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagtt |
15166574 |
T |
|
| Q |
216 |
cagctgaa-------------------ttcgttttgtatgtgattagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgcca |
296 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15166575 |
cagctgaattcgttttgtatgttcagtttcgttttgtatgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgcca |
15166674 |
T |
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| Q |
297 |
atgaactatgaaataaggctttcattcccccaaattcccatgtgattgcta |
347 |
Q |
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||||||||| | |||||||||||||||| |||||||||||||||||||||| |
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| T |
15166675 |
atgaactatcacataaggctttcattccaccaaattcccatgtgattgcta |
15166725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 15079873 - 15079506
Alignment:
| Q |
16 |
gtaagttggcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagat |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079873 |
gtaagttggcaattttggtattgctctattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatcttgaagat |
15079774 |
T |
|
| Q |
116 |
agcataataacaaagactcccctttattcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagtt |
215 |
Q |
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||||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079773 |
agcatgataacaatgacttccctatattgaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagtt |
15079674 |
T |
|
| Q |
216 |
cagctgaattcgttttgt-------------------atgtgattagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgcca |
296 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079673 |
cagctgaattcgttttgtatgttcagtttcgttttgtatgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgcca |
15079574 |
T |
|
| Q |
297 |
atgaactatgaaataaggctttcattcccccaaattcccatgtgattgctacccccatctacttcagc |
364 |
Q |
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||||||||| | |||||||||||||||| ||||||||||||||||| |||| || | ||||||||||| |
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| T |
15079573 |
atgaactatcacataaggctttcattccaccaaattcccatgtgatcgctaaccacctctacttcagc |
15079506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 15158950 - 15159057
Alignment:
| Q |
16 |
gtaagttggcaattttggtattgctccattggatgtataaccaaagctatgttttggagggtgctgcagtggtcttcgtattgagtgaaatct-tgaaga |
114 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| || |
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| T |
15158950 |
gtaatttggcaattttggtatttctccattggatgtataaccaaagccatgttttggagggtgctgcagtggtcttcgtattgagtgagatctctgagga |
15159049 |
T |
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| Q |
115 |
tagcataa |
122 |
Q |
| |
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|||||||| |
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| T |
15159050 |
tagcataa |
15159057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 15160208 - 15160303
Alignment:
| Q |
142 |
ttcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagttcagctgaattcgttttgtatgt |
237 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| |||| |
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| T |
15160208 |
ttcaaattgtaaacaaatttagttacttttttccattcaattttcaaatttagattgaaacaaactaaatagttcagctgaatttgttttgcatgt |
15160303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 15162041 - 15162162
Alignment:
| Q |
235 |
tgtgattagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattcccccaaattcc |
334 |
Q |
| |
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|||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||| | |||||||||||| ||| ||||||||| |
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| T |
15162041 |
tgtgatcagatcagactgtatcagttcacaagttttaag--------atccatgcattgccaatgaactatcacataaggctttcagtccaccaaattcc |
15162132 |
T |
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| Q |
335 |
catgtgattgctacccccatctacttcagc |
364 |
Q |
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|||||||| |||| || | ||||||||||| |
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| T |
15162133 |
catgtgatcgctaaccacctctacttcagc |
15162162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 3478464 - 3478523
Alignment:
| Q |
243 |
gatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaac |
302 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| |
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| T |
3478464 |
gatcagactgtatcagttaacaagtcttgagcattaccaatgcatgcattgccaatgaac |
3478523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 342
Target Start/End: Complemental strand, 3538052 - 3537953
Alignment:
| Q |
243 |
gatcagactgtatcagttcaca--agtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattcccccaaattcccatgtg |
340 |
Q |
| |
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||||||| ||||||||| |||| |||||| || ||||| ||| ||||||||||||||||| || | |||||||||||| ||| ||||||| || |||| |
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| T |
3538052 |
gatcagaatgtatcagtacacacaagtcttaagaattacaaat--atgcattgccaatgaaccatcacataaggctttcaatccaccaaatttccctgtg |
3537955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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