View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18550_low_6 (Length: 359)
Name: NF18550_low_6
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18550_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 41922611 - 41922247
Alignment:
| Q |
15 |
atgcaacactattaccctaaatttcaattctactaaattcaatccaaatatcatcactagcaagtttaattcaacacgcatttaaaaatacaacactctg |
114 |
Q |
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| T |
41922611 |
atgcaacactataaccctaaatttcaattctactaaattcaattcaaatatcatcactagcaagtttaattcaacacacatttaaaaatacaacactctg |
41922512 |
T |
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| Q |
115 |
acacacaaaatttcaattcaattctaccttataccacaagaaaccagcattcacatatcatat----------------------attttaatacaacaa |
192 |
Q |
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| T |
41922511 |
acaca--aaatttcaattcaattctaccttattccacaagaaaccagcattcacatatcatatccaattatcatcatcactaacaattttaatacaacaa |
41922414 |
T |
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| Q |
193 |
attcaaaaaacgcaacataataaccctaaatttaaattcaattgaaataacattatacctgaaacaccaatcgaatcccatcacgcgtatcaaccgcaac |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
41922413 |
attcaaaaaacgcaacataataaccctaaatttaaattcaattcaaataacattatacctgaaagaccaatcgaatcccatcacgcgtatcaacagcaac |
41922314 |
T |
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| Q |
293 |
cggaacacacgaacaaaaatatccactattaataatccgatgaacatcatcttgcacctcacgaacc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41922313 |
aggaacacacgaacaaaaatatccactattaataatccgatgaacatcatcttgcacctcacgaacc |
41922247 |
T |
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